Tatt003606.1
Basic Information
- Insect
- Trypoxylon attenuatum
- Gene Symbol
- lov
- Assembly
- GCA_963989405.1
- Location
- OZ022489.1:3072839-3074984[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.3e-08 2.1e-05 24.3 0.0 2 41 200 239 199 242 0.87 2 5 1.7e-10 2.8e-07 30.3 0.0 3 38 251 285 249 293 0.88 3 5 0.11 1.8e+02 2.1 0.0 21 34 320 333 306 338 0.79 4 5 2 3.3e+03 -2.0 0.0 32 45 348 362 348 362 0.89 5 5 5.1e-12 8.4e-09 35.1 0.1 2 39 362 399 361 403 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAAGCTACTAGCGAGAATGATATCAACGAGAGTTATTGCTTTAAATGGAATGATTATGAAAATCATTTGTCAGATGTAGTTAAGCAATTATTGGAAGAGAATTGTATGGTGGATGTTACCTTGTCTGCAGCTGGCGAACGTATTCATGCTCACCGTATTGTTCTCTGTGCTTGCAGTAGTTTATTTCGaGATATACTCAGTCAAGTAAACGAGGATCATCCGACTATTATATTAAGCGATATATCGCCTCAAGACATAAAGTCTATCGTAGAATTCACTTATAACGGAGAGGTGCGCATTCCggttgaaaatattaatagtTTATTGGATGCAGCCCGTTCACTGAAGATATGTGGTCTGATTGAGATCGATGGCTTAGAAGAAAATGAGTTACCattggaagagaaagaattcaatgaaaatgGCAGTGAATCAACGGTTGCTAAAAATAATACAGAGGAAAATAGTCTACCTTCGGCGAAGGAGAATACCGATGATTCTGACGGTGTAAGAGATGCACAAGTGACACAAAACTGTATTGCTAGTAAGAAGAGGAAGCGGAGACGCGACGTAACGAAGAGGGATTACAGCGAAGATATGTTAGCATCCGCGATCGATGATTTGCAGCTAGGTCAAACTTTAATAGAAGCAGCAACAAAGTACAATATACCACGTTCAACGCTTTACACACGTGCTAAAGCACTTGGTATACATTTGCACGCAGTGAGAAATGAATATTCTCAAGAGTGTATGAAGGCAGCGATCGATGCCGTTATAAATGGCTCGAGTCTACAAACTGCATCAGAAATGTTCAGTATACCTAAAACTGTGTTGTGGAGAAGAATTCAGAAAGATGGATATCCAGTTTTACGTTCTGAAATGAAACGAACGTATGCATCTGATAAACGGCAAGCTGCAGTGAAAGCTTTAGAAAGAGGGGAGAATCTGACGAAAGTGGCTCTCGAATTCAAAATCCCAAAGACTAcattatttcgcgataaagCGCGGTTGGTTGACGAAGGGAAATTACCATTGTCCTTTTGGAAGAAGCGCAAAACTGAAAACGAAGAGTTGAAGAGGGCTCGATTGGAGGAAGCAGTTGCTGCTTGTAAAGGTGGAAAAATGTCACAAGCTGCAGCATCCATGACTTATCATATTCCGAAAACAACAATTTGGAGACGGTTGCAACAAGATGGAAAAAAGACCGAGCGAGCATCAAGTCCCAAAAAATCAGCGCGTTCATCCGAAACAAAACCCAACGCGGAGGTGAAACAACAAGGGGAGGTGGATTTAGCATATTGTGAAGTATCGTCCGAGACTCCCATAACGTATATCGATGAGAACAGTATACCTGAGGATTCTGTGATAATATTAACGGCGGATGACTTGGACGAATTAAATTTAGAGGAAGGAAGACAAATCATAGTAAATTCAGATTCTGGACAAGAATATGTTCCGTGTACTATAAGTATCGAGGATAATGCAAATTACTCGCAGGCGGAAAGTTAG
- Protein Sequence
- MSEATSENDINESYCFKWNDYENHLSDVVKQLLEENCMVDVTLSAAGERIHAHRIVLCACSSLFRDILSQVNEDHPTIILSDISPQDIKSIVEFTYNGEVRIPVENINSLLDAARSLKICGLIEIDGLEENELPLEEKEFNENGSESTVAKNNTEENSLPSAKENTDDSDGVRDAQVTQNCIASKKRKRRRDVTKRDYSEDMLASAIDDLQLGQTLIEAATKYNIPRSTLYTRAKALGIHLHAVRNEYSQECMKAAIDAVINGSSLQTASEMFSIPKTVLWRRIQKDGYPVLRSEMKRTYASDKRQAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRKTENEELKRARLEEAVAACKGGKMSQAAASMTYHIPKTTIWRRLQQDGKKTERASSPKKSARSSETKPNAEVKQQGEVDLAYCEVSSETPITYIDENSIPEDSVIILTADDLDELNLEEGRQIIVNSDSGQEYVPCTISIEDNANYSQAES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01498311;
- 90% Identity
- iTF_01498311;
- 80% Identity
- iTF_01498311;