Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453051.1:2484379-2488944[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.00082 0.11 13.8 0.2 1 21 53 73 53 74 0.95

2 19 0.053 6.8 8.1 1.8 1 21 80 100 80 103 0.87

3 19 5.1 6.6e+02 1.9 5.9 2 23 114 136 113 136 0.95

4 19 0.21 28 6.2 2.4 5 23 528 547 527 547 0.95

5 19 5.3 6.9e+02 1.8 1.1 1 10 600 609 600 618 0.79

6 19 0.00068 0.088 14.1 0.1 1 22 655 676 655 676 0.95

7 19 0.002 0.26 12.6 0.5 2 23 685 707 684 707 0.95

8 19 0.021 2.6 9.4 2.0 1 23 717 740 717 740 0.94

9 19 0.11 14 7.2 0.2 2 20 773 791 772 793 0.92

10 19 0.023 2.9 9.3 3.9 1 23 800 823 800 823 0.97

11 19 0.35 45 5.6 7.4 1 23 834 857 834 857 0.93

12 19 0.00011 0.015 16.5 1.3 1 23 884 906 884 907 0.95

13 19 1.1 1.4e+02 4.0 7.6 2 23 918 940 917 940 0.93

14 19 5.5 7e+02 1.8 0.1 2 20 1011 1029 1010 1031 0.91

15 19 0.028 3.6 9.0 1.8 1 23 1038 1060 1038 1060 0.96

16 19 0.0052 0.67 11.3 0.2 1 23 1069 1092 1069 1092 0.91

17 19 0.0033 0.42 12.0 0.3 2 23 1178 1200 1178 1200 0.93

18 19 0.0058 0.75 11.2 0.6 2 23 1263 1285 1262 1285 0.91

19 19 0.065 8.3 7.9 0.2 2 23 1362 1384 1361 1384 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.00082	0.11	13.8	0.2	1	21	53	73	53	74	0.95
2	19	0.053	6.8	8.1	1.8	1	21	80	100	80	103	0.87
3	19	5.1	6.6e+02	1.9	5.9	2	23	114	136	113	136	0.95
4	19	0.21	28	6.2	2.4	5	23	528	547	527	547	0.95
5	19	5.3	6.9e+02	1.8	1.1	1	10	600	609	600	618	0.79
6	19	0.00068	0.088	14.1	0.1	1	22	655	676	655	676	0.95
7	19	0.002	0.26	12.6	0.5	2	23	685	707	684	707	0.95
8	19	0.021	2.6	9.4	2.0	1	23	717	740	717	740	0.94
9	19	0.11	14	7.2	0.2	2	20	773	791	772	793	0.92
10	19	0.023	2.9	9.3	3.9	1	23	800	823	800	823	0.97
11	19	0.35	45	5.6	7.4	1	23	834	857	834	857	0.93
12	19	0.00011	0.015	16.5	1.3	1	23	884	906	884	907	0.95
13	19	1.1	1.4e+02	4.0	7.6	2	23	918	940	917	940	0.93
14	19	5.5	7e+02	1.8	0.1	2	20	1011	1029	1010	1031	0.91
15	19	0.028	3.6	9.0	1.8	1	23	1038	1060	1038	1060	0.96
16	19	0.0052	0.67	11.3	0.2	1	23	1069	1092	1069	1092	0.91
17	19	0.0033	0.42	12.0	0.3	2	23	1178	1200	1178	1200	0.93
18	19	0.0058	0.75	11.2	0.6	2	23	1263	1285	1262	1285	0.91
19	19	0.065	8.3	7.9	0.2	2	23	1362	1384	1361	1384	0.87

Sequence Information

Coding Sequence: ATGGCTGCAAAGCGAAGAGAAGATCTCAAGTTAATCAATGCGGTAgataagaaattcaaaatgtctaAAAATCGAAGAGGAAAGCTACAATACAGTGGAATGAAAACAGAAAACATAAAGATCCcatttgttttaaagaaaacaaaagatGGAGGATATGTTTGCCAAGTTTGTTTTGTCACCTTTTCTAGCCTAAACACCTTAAAACGCCATATTGCACGGTTTCAAGATCCGAAATACCCGTGCGACAAATGCGGCACCAAATTTACCAGCATGCACATTTTGCAATCACACGTCACTTTTACACACGGCgctgaaacattaaaaaattatagaacgaAATGCCCAGTTTGCAATCAACATACACATGTTGAAGCCACTCTTCGATCTCATATATGCCATGTTCATAGTGAGTGGGTGAAAACGAATTTTGCTAAATTTGTCGCGGAATCTTCCGCAGCTGAAGGGGAAACTTCGTTTGCCGCAAAGAATTGCCCACCATCATCCTGGAATAGATATATGATGATCAGATTTGTAAGACACATTATCGCGAATACAACAAACAATGATAACGAAACCGCGCCGGAAAGAAACGGACTTagcaacaataattattatatacaacAAGAAGGTTTGTCGAAGGCAAGCAAATTGTATCGGGACGCTGAATCACTGCGAGTTCGATATTCCTGCAAAGACTGTTATGTACCATTGGTCAGAATCGACTCGAGCAAGAATACGCCAAAAAAACTCGTAACGCCCGTAAAAAAGCGGAAGATAAGTCCAGCGAAAAAATCTTCTTACCGAGCCAATGAAGCTAAAAGTCCCGAAGGGATGAGCCCCGTGAAACGAAGAAAAAGAGATAAACCAAAGCAATTGGGATTGGCTGATATTGGAATGTGTCCTGACAAGCTTCCGGAGTCAAATGTCTTCGTGAAATCAGAATGTAAAAGTTATGAAAACTTTGAGATCTCAATCCCAGTCACAGAACCACTAGAGGAATGCGCTGATCCACTAGACTTGGGTGAATTCCCGACGGAAACCACCAGCGCTCTTGCACAATATCCGACATTGTGCGAGTTAccagtaaaaattgaatatccgGAAGCAAGAACTGGAAATCCCGAACAATGTGAAGAAATGCCTGTCGATCCGGTTAAAGTCGAACCCATGGATTGCAACGATTCATCGGAAAGGATAGAAGTTACGGATTGCAACGACTCATCGGAAAGGAGAGAAGTTACGAATTGCAACGATTCATCGGAAAGGATAAAAGTTACGGATACATGTCTGGAATCACAAGACAATACAGATAAACCTGAAACTGTACAATATTATTACGGTGAACCATCGGTCGATTTCACTGATGCATCTGTAGACTGCATGGATGCATTCGAACCGGTCAAAGTTGAAATAGAGGAACACCCAATTCCGGAATACTCAGAATGTAGATCGGAGGGCGCTGTTGAAAGTCCAGAGATACCAGATGCAAACTCTCGTACGATCGAGACAAGCTCTTTGTCAACGGCCGCACCCGAAGAGATGCAAGTTCAGGAAGGTTGGACCATGGTAGCATCGAAAATCTGCAACAAACTCTTTACTAGCCGGCGTACCATGCTTCGACACTTTCGGAAAAGGCATTTGTCATGTTTCGACGATACTGTTTATTGCGTTTGTGGCAAGGAAATGAATGGACGCAGAGCAATGGAaaaacacttttctcgacaCTGCGATAGACTTGTTAAAACAACGAGAAATTCATCCGAACACAAGTTATGTAAGCCCTTGGAAAAAAAGTTCCAGTGTGCTAAGTGTGACCAGAAGTTTTGGTTGCCGACCTGCTTGGAGGATCATCCTCCTAACTGTGAACTTCCCAAGCCTAAGCCCGTAAATCCGTGTCGCTTAATAAAGAATATTAACAGAGCATACGGGCTAACGAGTCATCTTGGTGAAGTTGGAGAGTACATTTGTCGGATTTGCGATGTTAAATTCACTTCTATCGATACGTTGTTGCGACACCTACGTTCTTTTTCgtctaatgaaaaaaagagcactTGTGTCCATTGTGGGACAGTATTCACGGGACCGCGACTTTTAAAGGGCCACGTCCAGTCGACGCACGAACTCAATTCCACGACGACGTATACCTATTTCTGCGAAATTTGCAATCAGGGTTTTACTAAAAAGATTAATCAACGTATACACACAATGCATATCCATTCAAATGAAGTGATGAAGCGAGTTATTGAAGGTCCCACTGATTATGTCTCCTCAACTAACAACGATGCCCCTGTTGTCGCAAGCACGCCGGAAAATCAGTGTAACGTGTGTAATCTGGTATTCGTAAGTCGCAAACGCTTCATGGATCACGTTAGTTATTACAACAAAGGCGCTCATTATCGCTGCAACATTTGTGGTGAACAGTTCGACGGTCAATACAAAGCTCATCATCACAGAAAGAAAGTTCATTATGGTGGAAAGATAAAAACCACGTACACGCATTACTGCGACTTATGCAAAGAAGGATTTATGTACAAGACACATTTACACGCTCACATGTTTCACGTACACGACGATGAATTCAATTGCGTTACTTCCGTTAAGGACTATAACTTGCCACAGGAAAACGAACAATCAGCCAAAGGTTTTTTCCCGTGTAATCTATGCTCAAAAACGTTTAGTACCCCTTCAATTCTTTTCACTCATATGGACGTGCATCACGGAGAAGACCCGACAAAGATAAACTCAGTAAAGTGCAGTCATTGCGATAGACATTTTACAACGTTGGCGGCATGTATCAACCATCTGAAGCATTCTCATAATAATGTACCCCCATTGGTTAGTGACATTTCGCAAGGTGTGCAATCTACCCACAACAGTTCGGCGGATATTGACGTGATCGACATTTCGATATCTGACGAAAATGATGAAGGTTCCGTAGATCCCAATGTCGGGGAAACTCAACCCCACAAAACAGATGAAGCGAATGTTGAAAAGCAAGCAAACGAAGACGATGTCGCGAAGTCATCGGTGTGCTTTACTTGTGGCTTCGATTGTCCTGGTCCGTGGGGATTAGCGAGGCACAGGGCTCTCTATTTGAACTCCGGTATATACGCATGCGAATTTTGTGGTAGAAGATTCAGTTGGCAGACCTACTATCGCGATCACAAACTGAAACACTTTCGTCGTGACGTACACAACAACTTCTTCTGTCCCATATGCGACGAAGGATTCGATACGGTTAATGATTTGAAAATGCATGCAATCCATCTCCATCCAGAACCCTTCGATGCCCTAAACTGTGGCCCGGTACCGAATACTTCCAGAGCGAACATTTTTAGAGACGAAGGAAATGATTCGAACTGTATTGGTAATCCGCATCAGCCTCATACAGTCACGCTAAGCAATGATTGCGAAAGCAAATATGGACAAGTTGTCCAACTTCCGGAAAACGCAAGGACCGTTTTCAAACAGAACCGTGTTGCAAGTGACATAACGGAGGATTCATCTAATAGTTTGAACCGTTATCCAACGTGTAACATCTGTAATATGGCTTTCATAAGCAAGGAAATGTTGTACATCCACCGAGAAAACAGCCATTCTGGCGTTCCATCCTGGCTATCGACGGCAAACGAAGCTAAGACTTCACAAGTTAATGATCGGTTTTATATTTTGCTCGGTGAGAAAGTTCATGCACGAGCTGTCGAcagtataggaaaaaaaattgcaatgtgtGACAAAAATATTGGTCTTACGAAGAAACTTTATCGTTACGATGTCCCGATGACGTGTGACGTTTGCAATCTTACCTTCCAGAGCAAAGATATGCTGTTGAACCATCGCGAATTTCTGcacaaaatagagaaaaatttcgtttttcaaagcACCAGTGATGATGGAAAACAATCCCCGGAAAAGAATGTAGTCAATAAGCCGGAACGTGCATATCAAGAACCTGGTGGTGAAAGAGTCCACTTGAAAGTTCGATCAACTGCTCCAATCTCTGTATTACGAtcgggaaaaaaacaattacaggCAGTGGCGACGAGTCCGGAGACATCAGTCGGAGAAGCCTACTGCTCGAAATGCAGACTTTGTGATATTGTTTTCACTGATAAAAATCTTATGGCAATTCACAATGTGAAGATACACGGTTTGAGAAATGGTGATGATAACACGGTGGACGATGTGACCCTTCAGCCTCTGGGCAGCGTTGCAGATGCATCCCGGCTTGGGTGTGTTGACAATTTATGGATTGGGTCGAAAAATCAATGTGATCAACCAATGCCTCCACTAACTTCATGCAGTCAATATGTTCCCATTGTCAATCCTGTAGCTAAGAATACTTCGCCAGAAGAAATACTGATTTCAGACGAAGATACCGAAGTCAGTATTGAACCTATTTCAACAGCGCCCAATCCATCGTTCAGTCGAGACAAGGAAAGTACATCGTCGCCCCCATTGAGACTTATAAATTTGCCGCCCGGAAACTATAAGATatcgaaattgaaaatacgaTCGACTGACACAGGGAAAGTAACGAAGCTGTCCAGAAACACAAAATGA
Protein Sequence: MAAKRREDLKLINAVDKKFKMSKNRRGKLQYSGMKTENIKIPFVLKKTKDGGYVCQVCFVTFSSLNTLKRHIARFQDPKYPCDKCGTKFTSMHILQSHVTFTHGAETLKNYRTKCPVCNQHTHVEATLRSHICHVHSEWVKTNFAKFVAESSAAEGETSFAAKNCPPSSWNRYMMIRFVRHIIANTTNNDNETAPERNGLSNNNYYIQQEGLSKASKLYRDAESLRVRYSCKDCYVPLVRIDSSKNTPKKLVTPVKKRKISPAKKSSYRANEAKSPEGMSPVKRRKRDKPKQLGLADIGMCPDKLPESNVFVKSECKSYENFEISIPVTEPLEECADPLDLGEFPTETTSALAQYPTLCELPVKIEYPEARTGNPEQCEEMPVDPVKVEPMDCNDSSERIEVTDCNDSSERREVTNCNDSSERIKVTDTCLESQDNTDKPETVQYYYGEPSVDFTDASVDCMDAFEPVKVEIEEHPIPEYSECRSEGAVESPEIPDANSRTIETSSLSTAAPEEMQVQEGWTMVASKICNKLFTSRRTMLRHFRKRHLSCFDDTVYCVCGKEMNGRRAMEKHFSRHCDRLVKTTRNSSEHKLCKPLEKKFQCAKCDQKFWLPTCLEDHPPNCELPKPKPVNPCRLIKNINRAYGLTSHLGEVGEYICRICDVKFTSIDTLLRHLRSFSSNEKKSTCVHCGTVFTGPRLLKGHVQSTHELNSTTTYTYFCEICNQGFTKKINQRIHTMHIHSNEVMKRVIEGPTDYVSSTNNDAPVVASTPENQCNVCNLVFVSRKRFMDHVSYYNKGAHYRCNICGEQFDGQYKAHHHRKKVHYGGKIKTTYTHYCDLCKEGFMYKTHLHAHMFHVHDDEFNCVTSVKDYNLPQENEQSAKGFFPCNLCSKTFSTPSILFTHMDVHHGEDPTKINSVKCSHCDRHFTTLAACINHLKHSHNNVPPLVSDISQGVQSTHNSSADIDVIDISISDENDEGSVDPNVGETQPHKTDEANVEKQANEDDVAKSSVCFTCGFDCPGPWGLARHRALYLNSGIYACEFCGRRFSWQTYYRDHKLKHFRRDVHNNFFCPICDEGFDTVNDLKMHAIHLHPEPFDALNCGPVPNTSRANIFRDEGNDSNCIGNPHQPHTVTLSNDCESKYGQVVQLPENARTVFKQNRVASDITEDSSNSLNRYPTCNICNMAFISKEMLYIHRENSHSGVPSWLSTANEAKTSQVNDRFYILLGEKVHARAVDSIGKKIAMCDKNIGLTKKLYRYDVPMTCDVCNLTFQSKDMLLNHREFLHKIEKNFVFQSTSDDGKQSPEKNVVNKPERAYQEPGGERVHLKVRSTAPISVLRSGKKQLQAVATSPETSVGEAYCSKCRLCDIVFTDKNLMAIHNVKIHGLRNGDDNTVDDVTLQPLGSVADASRLGCVDNLWIGSKNQCDQPMPPLTSCSQYVPIVNPVAKNTSPEEILISDEDTEVSIEPISTAPNPSFSRDKESTSSPPLRLINLPPGNYKISKLKIRSTDTGKVTKLSRNTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -