Tlin007286.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453037.1:11700892-11707929[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.44 57 5.2 0.5 3 21 262 280 262 281 0.87 2 12 0.0023 0.3 12.4 0.8 1 23 287 310 287 310 0.96 3 12 0.00016 0.02 16.1 3.1 2 23 323 345 322 345 0.96 4 12 0.04 5.1 8.5 0.4 3 23 358 378 358 378 0.97 5 12 9.6e-08 1.2e-05 26.2 1.5 2 23 417 438 416 438 0.97 6 12 0.007 0.9 10.9 0.4 1 23 443 466 443 466 0.91 7 12 0.37 48 5.5 1.9 2 23 540 561 540 561 0.97 8 12 0.036 4.7 8.7 4.0 1 19 570 588 570 598 0.96 9 12 2.6e-06 0.00034 21.7 1.5 1 23 600 622 600 622 0.96 10 12 0.016 2 9.8 4.6 1 21 628 648 628 649 0.95 11 12 0.23 30 6.1 0.0 1 23 760 783 760 783 0.97 12 12 6.9e-07 8.9e-05 23.5 5.9 1 23 788 811 788 811 0.98
Sequence Information
- Coding Sequence
- atggcTGTTTCCGAATGGGATAATTCGTGCAGACTCTGCGCCGAAGAACGGACAGAGATGTTTTCTATTTTTGGAGATGAAGGCTTTCGACGCAAGGTTGCGCATAAACTGCGTGTTTGTCTGCCTGTTATGGTATATAAAACTGATCCACTGCCCAAAAAAATATGCCAATTTTGTGCGGCACGTCTTGATGATGCTTATGAGTTCAGAGAGTACTGCCTTAATGTCTACAAAACCATGCATCTCAAGCTTCTCACTCTCAGGAACTCCAAGGCAGTGGAAATTTATATGGATGCCATGAACAATTCACCCGATCCTTGCcaaGTACAACTATGTAAAGAAAAAGCTCGGGCTCCGCCGCCTTTGGTGCCGCTTCCGGCTTCACTGCCACTTGTAAAACGAGTAACCGAAGTCGAAGATCCTCAATCATTACCCACTGTTAACGTTGGAGTCGAACCATTGCCAGAATTGCCGTGCGAAGTTCAAATAAAAGAGGATCCAGGCTATCAAATAGTCGAACCTGACTTAACTGCAGAAAAAGATGCTCAAAATCGTCAAGTGTTCTCGAGATGTGCGAGCCCCGAGAGTAAGACTGAAGAATGGGATGATACCGACATCATAACTCTCGATGACGGTTTGGCAGAGAACGAAACGTCGGATGCAGAAAACACCCAAAAGGAGGAAAAGCGAACGAGTATTTTGGAGCAAGTTTTAACAGGCAATTTGACCATCAACGACTGCAAAGAATTAACGCCTAAAACTAAACTCACTTCTCAATGGTGGTGCTCACCTTGCAACAGTTATTATAGAACAAAAAACAGTCTGATGAAGCACATGCAATTGTTCTGTCCTCGGACTTACACATGTTCAAAGTGTTCGCTGGTTTTTCACACGGTCGAGGAACTTGCGAAGCACGAAGCGACGAGTCATCTGAAAGTCACTCTCGATTTTGACGAAGCGCTTAAAGAGTGTCATCAGTGCGATCGAGAATTCGTTAGTTGGGAAATGTTGCGGCATCACAGACTTCGCGATCATATTGCGGGCTCCATGGAAGTCGGAACGAACACGTGGTGTCCGCTTTGTAATAgatttttcccAACCGTCGAATTGTACTACAATCACAAACAACTTCACAACGCTGGAACTTTGCCGCGGTCAACGATACAAACGTCGATACCGACGTCGCAGATTAAAGAAAGTctcaatgaaatgaaaaaagaacaCTTCATAGAAAGCGTCAAGTCTCTTACCTGCCCAACGTGCGGAAAGGTTTGCACGCAACAAAGTGCCTTATCGAATCACATGCGTACACATGAGCCCAAAAAACACAAATGTGAAATATGCGGCCGATCTTTTGGCCTGTTTATACGACTGGCGGCGCACAGGCTGAGTGAACATGGTCAGCAGCCGATTATGTCACCGATTACGGCTAGCGTTGAGCAGGAGGAAGCTTTAAATGCAGAAAGAGAAGCGAGAGAGGCTCGAGAAGCTCGCATACATGGAACCCGAAACCGAACCTTTTCCGAGATCTTAGACGAATACGAAGTCTCGATGGAGGAGCAATCGAGCACAAAACGCGAATCTCCTCAAGATGCGAACTCGTCAAAAAACGTGGCCCGATGTGGAATTTGCCAGCAATGGTTTAACGATCACACAACTATGTTGACGCATCTTCAGACGCATTCGGATAATCTAACGACGAAGAGTTTTTGCTGTAGAGTGTGCAAGAAAACTTTTAAAGAAAAGTGGCAAATGATTAGACACGAaGTTTGTCATAAACGAATAAAAACTCCTAACCACGCGTGCAAAACGTGTAAAAAAACATTCGCGGACCAGAGTCAATTGGAGGCTCACCAAACGATTCATAAAGTGAACAAAACTTATCACTGTCCAAAGTGCaacaagatatttttcaaagaattttcacTGATGACTCATCAGTGTAATGTTGCGTTAGCTGTAAGCAAGAGAAATCTGAGCCCAGATAAAAATGCACGAACGACATCGAGTTCATCGACTGGCGGTAGCGCGAAAAAGCGCAAAAGTCACCACGGTGGAAAGTCGAGGAATTCCAACTCAAAAATACAGGAGAAAGCGCGCGCCAagATTCGAAAAGAAGACGATCTGGTGAAATTGGATAACGAAAAGATGCCAAAATTGAGTCCTGAAACTTCCACGAGCACGTCGATACCGCTCATAGAaccaaaaatcgaaattaacgaaGAGGAGAGTCTGCCCATACCTGTTAAAAGGACGTTGATCAGGACTGCGGGCGGATTTCGATGCGGTGTTTGTCAGTCTCCGTTCGTGCTTCGCGAATTAGCGGTCGCTCATCTCCGGTCCGCTCATCCTATGATGCCCTACCAGTGTCCTTATTGCAAAAAACGATTCACAACGCAATACACTTTTACTCATCATATCAAAACTGATCATCCTGATGAATCGGAGAAGTGA
- Protein Sequence
- MAVSEWDNSCRLCAEERTEMFSIFGDEGFRRKVAHKLRVCLPVMVYKTDPLPKKICQFCAARLDDAYEFREYCLNVYKTMHLKLLTLRNSKAVEIYMDAMNNSPDPCQVQLCKEKARAPPPLVPLPASLPLVKRVTEVEDPQSLPTVNVGVEPLPELPCEVQIKEDPGYQIVEPDLTAEKDAQNRQVFSRCASPESKTEEWDDTDIITLDDGLAENETSDAENTQKEEKRTSILEQVLTGNLTINDCKELTPKTKLTSQWWCSPCNSYYRTKNSLMKHMQLFCPRTYTCSKCSLVFHTVEELAKHEATSHLKVTLDFDEALKECHQCDREFVSWEMLRHHRLRDHIAGSMEVGTNTWCPLCNRFFPTVELYYNHKQLHNAGTLPRSTIQTSIPTSQIKESLNEMKKEHFIESVKSLTCPTCGKVCTQQSALSNHMRTHEPKKHKCEICGRSFGLFIRLAAHRLSEHGQQPIMSPITASVEQEEALNAEREAREAREARIHGTRNRTFSEILDEYEVSMEEQSSTKRESPQDANSSKNVARCGICQQWFNDHTTMLTHLQTHSDNLTTKSFCCRVCKKTFKEKWQMIRHEVCHKRIKTPNHACKTCKKTFADQSQLEAHQTIHKVNKTYHCPKCNKIFFKEFSLMTHQCNVALAVSKRNLSPDKNARTTSSSSTGGSAKKRKSHHGGKSRNSNSKIQEKARAKIRKEDDLVKLDNEKMPKLSPETSTSTSIPLIEPKIEINEEESLPIPVKRTLIRTAGGFRCGVCQSPFVLRELAVAHLRSAHPMMPYQCPYCKKRFTTQYTFTHHIKTDHPDESEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414549;
- 90% Identity
- iTF_00343379;
- 80% Identity
- -