Tlin017235.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453043.1:5593609-5596291[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.065 8.4 7.9 2.6 7 23 320 336 314 337 0.88 2 10 1.9e-05 0.0025 19.0 0.8 1 23 341 363 341 363 0.98 3 10 0.00072 0.093 14.0 1.1 3 23 374 394 373 394 0.97 4 10 2.6e-05 0.0033 18.6 2.5 1 23 536 559 536 559 0.96 5 10 1.5e-06 0.0002 22.4 1.7 1 23 592 614 592 614 0.98 6 10 0.00032 0.041 15.1 4.0 1 23 628 650 628 650 0.96 7 10 0.00017 0.022 16.0 4.7 1 23 656 678 656 678 0.98 8 10 0.0015 0.19 13.0 3.2 1 23 684 706 684 706 0.98 9 10 5.1e-05 0.0066 17.6 6.5 1 23 712 734 712 734 0.98 10 10 0.00024 0.031 15.5 0.3 1 21 740 760 740 761 0.93
Sequence Information
- Coding Sequence
- ATGGAAACTGTGAACAAAGGTGACACTTGGTCAATAAGAAACAAGAATTTATGCAGGGTTTGCTTATCGCTGGACGAAGAAAACAAGTGTATTTTTACTATGTGTGACAATCTTCACCATGAGACCTGCAATCTGACAGATTTGTGGAAACAATTACAGTTTTATGGTGGCATAGAGGTTTCACAGGATGATGAACTTCCTGCAAAAATGTGCAATGAATGCATATGCAAAATGCGAGTTGCTCATGAATTCAGAATGCAGTGTCAAGCGACTGACAAAATATTAAGGTCAATCGATAATAATAGCAGAAACACACGATGCATGACTCCAGATACATTTAGGCAGAATAAAAGCGAATCTAAAAACGAATGTCCTCGAAGCAATGGAATTAAGGAACCAGATAACCTCAGTAGCGATGAATCAAATATAGATACCCAAATAGAATTGAGTAGTAATCGACAAATACTCAATATTTCAGAGGGCAAAATATCCTCATTTACAAATAGTCGAGAGAATCATAAACTAGCTGTAGAGGAAAAAGTTTCTCAAGCTAGAACGATACTTGTGATCAAGAAAATTAATAGTAATATAGATGATAAGGCCTGCGGAGCTCCTGTATTACCTGCAAGCCAAaacattgaaaacaaaagtCTTAAGTCTGTTTTTCAGAAGTCTGACAATGATAAAAGTGGAGATATTTCGGAATCAAAGGAAGACCaaacagtattgaaaaaagATGAACATAGATCACGGAGATTGATTCTCTTCAAGAGGGCAACATCgatgacaaatttgaaaaacaataaggAACGACAGAGGCGATacataaaaaagaatctttcGCCAAAACTTAAAGGCAGTGATCAAAAGAGTGTACAAAAGAATAAAAGCTCGTATGGTGAATTgcgaaaatcaataattactgaTAGTAACTTGCCTCACAAATGCTCTAAGAGTGGCAAAGCGTATTCCAGCAAAACGGCTTTGGAATCACACCAACGAAGTCACCATTACCAGGAATTTTCGTGTGATCAATGCGGCGAGAGATTCAATCAGCTAGACGATTTTCTCAAGCATGCAAAGACACATGGCCTTGATGAAAAGCTGAAACCGGCGAACTGCAAACTTTGCAACAAGAATTTCAGAAAGGCAGTCACTATGGTGAGGCACCTGAATGTTCACAAAAGAGAAAATCCGAGAGCTGTGTACGCTATTCTGAAGGATATCAGGGATAGGAAACGAGGAGAACATTTTAAAGTTTtagagaaaaatgttgaaaactcggaaaattttgaagaaaatattgttcCTCAGGAcggtaaaaaattcaacaaaattaaatCAGATTCGCCAGAAAATCACGCTCGCATTTCGGAGTTTATCAGCACTGATTCATACAGAGTGGAAGACCCGGAATCTTTTAATAAAAGATGTTCGTCGAAGGACAAAATGGAAGCAGATGAGTTAAATAGTCAGTTAGAGCATTACAGAGATTACAAGTGTAACAAAAGTTGGGAGCAAAGTCCACCGGACGAGAGATCGGctataaaattgataaacatctGGATAAAAGAGGAACTAGATTCGGACAACGAGGGCAAAGGTTTTCCCTGCGAGAATTGCAGTAAATCTTATACTACGAAAAAGTCGCTTTTGAAGCATCAAGAGAAATTCCACGGAAATACAATTGCAGAATTTTGTCCACGTTGCGGTAAAGAGTGTATCTGCACAAACAAAATCAAGGAAAACCAAAATAAGACGCAGGATAAATCGTTTACGTGCGAGACGTGCAATAAAACGTTTGAGAACGAAACGAAACTCGAAAAGCACATGAAAATTCACGTGCGAGCCAAAGAACCAGAGGACacgaatttcaaacgattcttaTGCCACGTTTGCAGCAAAACCTTTCGACAAAACACTGGTCTCATGTTCCACATGCGAACTCATACGGGTTACAAGCCTCACGTTTGCAAATACTGCGGTCGAGGTTTTACATCAAATTCCAATTGTATTAATCACGAACGCACCCACACTGGTGATAGACCATTTGTTTGTCACTTCTGCAGCGCAGCATTCGCAAAATCCTGCACTCTTAAGGCACACATCACGACTCACACTGGAGAGGCAAATTATCATTGCAAAACGTGCGGAAAATCCTTCAGGAGATTGAAGTACCTGAAGGAGCATAGATTTACGCATACCGGTGAGAAACCTTATGCTTGCAAAATCTGTGGCACAGCGTACAGTCATTCTGGTAGTTTGTTCGTTCATGAGAAAAAATGCAAAGCTCAAGAAGGAAATTATCACGTGATATCCGTGCCGGTAAATTACCATCAACAGCCTCCGACGGAGACTGTCACAGCTTCATCAATGCCACCGATAATCACTACATTGCCTCCTGCTCATCATGTTAGATCGATAGGTGAAGCTTTTACTGTGGACCTAACTAAAAGTTATGCGGAAAGTCTCCCGAGAATTGACGGCTTAACGAATTCTGTGAGCGAAAGCGTGGACCATCATATTCTGATGAACCCGGACGCCGGTGACGTGACCTCAGCCGTCAGAAGTTTTACCATCGTCAGTCAAACATTTCATACGTAG
- Protein Sequence
- METVNKGDTWSIRNKNLCRVCLSLDEENKCIFTMCDNLHHETCNLTDLWKQLQFYGGIEVSQDDELPAKMCNECICKMRVAHEFRMQCQATDKILRSIDNNSRNTRCMTPDTFRQNKSESKNECPRSNGIKEPDNLSSDESNIDTQIELSSNRQILNISEGKISSFTNSRENHKLAVEEKVSQARTILVIKKINSNIDDKACGAPVLPASQNIENKSLKSVFQKSDNDKSGDISESKEDQTVLKKDEHRSRRLILFKRATSMTNLKNNKERQRRYIKKNLSPKLKGSDQKSVQKNKSSYGELRKSIITDSNLPHKCSKSGKAYSSKTALESHQRSHHYQEFSCDQCGERFNQLDDFLKHAKTHGLDEKLKPANCKLCNKNFRKAVTMVRHLNVHKRENPRAVYAILKDIRDRKRGEHFKVLEKNVENSENFEENIVPQDGKKFNKIKSDSPENHARISEFISTDSYRVEDPESFNKRCSSKDKMEADELNSQLEHYRDYKCNKSWEQSPPDERSAIKLINIWIKEELDSDNEGKGFPCENCSKSYTTKKSLLKHQEKFHGNTIAEFCPRCGKECICTNKIKENQNKTQDKSFTCETCNKTFENETKLEKHMKIHVRAKEPEDTNFKRFLCHVCSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHSGSLFVHEKKCKAQEGNYHVISVPVNYHQQPPTETVTASSMPPIITTLPPAHHVRSIGEAFTVDLTKSYAESLPRIDGLTNSVSESVDHHILMNPDAGDVTSAVRSFTIVSQTFHT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -