Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: PRDM10
Assembly: GCA_949699805.1
Location: OX453048.1:14889529-14896492[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00011 0.015 16.5 0.5 2 23 501 522 500 522 0.96

2 14 1.2e-07 1.6e-05 25.9 1.0 1 23 557 579 557 579 0.97

3 14 0.01 1.3 10.4 2.1 1 23 587 610 587 610 0.97

4 14 0.0095 1.2 10.5 0.1 2 23 628 649 627 649 0.95

5 14 0.0019 0.24 12.7 0.2 2 23 663 684 662 684 0.97

6 14 0.0008 0.1 13.9 1.5 2 23 702 723 701 723 0.97

7 14 0.0075 0.97 10.8 1.6 2 23 732 753 731 753 0.96

8 14 0.027 3.5 9.0 0.1 1 23 760 782 760 782 0.98

9 14 0.00013 0.017 16.3 3.0 1 23 789 811 789 812 0.96

10 14 0.0027 0.34 12.2 1.6 1 23 817 839 817 839 0.98

11 14 0.00012 0.016 16.4 4.7 1 23 845 868 845 868 0.96

12 14 0.0047 0.6 11.5 1.9 1 23 901 924 901 924 0.97

13 14 0.00015 0.019 16.2 2.0 1 23 946 969 946 969 0.95

14 14 0.0018 0.23 12.8 3.4 2 23 1006 1028 1005 1028 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00011	0.015	16.5	0.5	2	23	501	522	500	522	0.96
2	14	1.2e-07	1.6e-05	25.9	1.0	1	23	557	579	557	579	0.97
3	14	0.01	1.3	10.4	2.1	1	23	587	610	587	610	0.97
4	14	0.0095	1.2	10.5	0.1	2	23	628	649	627	649	0.95
5	14	0.0019	0.24	12.7	0.2	2	23	663	684	662	684	0.97
6	14	0.0008	0.1	13.9	1.5	2	23	702	723	701	723	0.97
7	14	0.0075	0.97	10.8	1.6	2	23	732	753	731	753	0.96
8	14	0.027	3.5	9.0	0.1	1	23	760	782	760	782	0.98
9	14	0.00013	0.017	16.3	3.0	1	23	789	811	789	812	0.96
10	14	0.0027	0.34	12.2	1.6	1	23	817	839	817	839	0.98
11	14	0.00012	0.016	16.4	4.7	1	23	845	868	845	868	0.96
12	14	0.0047	0.6	11.5	1.9	1	23	901	924	901	924	0.97
13	14	0.00015	0.019	16.2	2.0	1	23	946	969	946	969	0.95
14	14	0.0018	0.23	12.8	3.4	2	23	1006	1028	1005	1028	0.96

Sequence Information

Coding Sequence: ATGGATTCGCGGGGCCCTCCCGAGGGGGGCCCTATTGACCCACTCGTTTCACCGATTATCGACAAGTCCTCCGAAATATCGGATAATTGGTCAGCCAGTAATTTGGTTGCCTCTGCATTTGGTGATCAATCTAGGAAAGCCAACAACAACACACTGCTCTTTGTCACTGTTGGCTACATGGAAGATCAAAGTCGAGACTACTCAAAGATGTTCCCCGCTTATGAGCCGGTACCTTTTGCCTCTCATCCGCCATCTCCGCTTTCGGATTTTGAACAACGTGTGAGCACCTTAGATCCCAACATGAGCTCAGCGGCGAGATATTCTCCTACACCTGTACCACTTCCCCCTCTGCCTTTTCCAAATTCCGTTGTGGTTCTTCAAGGTCCACCCTCTCCGTTTGTTACACCTCCCGAGAGTAACGCCAGATCCAACATCAATTTTGGTGCCACTCAAAGCTGCGACCAGAGTATACCACAGAGCGATGTTGTCAATGACTTTGTTACCAATGGCAATGATAGTTTGGCATCCGGCGTCAGTGGAGAATTGATCTTGATGCAagGTGCGAATTCGGAATTGGAAGGGTCAGCGACACCACTGATGCTAACCGGTATTCCCGGTGCGGAATTTGCCTTGACGAGGGAATTTCTTGTAATGCAAGACGATCAAATAAATGTAATGGGCGCTCTGAGAAATCCGGAAATTAGTGGGGATCCGACAGTGATCGTGTCACAGAGAATTTGTATGGAGGAAGAAAATGTTGTTTCGGAGTGTGTTCCAATGCCGGAAAAGGATGCGGCGGGTGAAGATAGGCCGGAGGTAGGGATGCCGGAGAAAGaaactgagaaaataaatatggaaAGAAAAATGGTAAGACGATCGAGGAGGAGGCAGATCAACGATAAAAAGACCTTTTGGTGCGAAGAATGCGGTTGTCACAAAgcaggcggcggcggcggtggcggcggtggtggcggcggcggcgtcgGTGGCGAGTGTACGTCTTCGAAGAATGTACGAACGATCGCCGATGAGCCAGTGCCCTCGCGCGCTATCGCCACACTGCCCGGCTCTTATTTGTCTATAAACAAATTGTCGGCATCAATACCAGGAGGCCCGGACTTTGGTGTTTTTGCGAAACGTAACATTCGCTCACGCACCCAATTCGGTCCGATCGAAGGGATTCTATGGCCGTATTACGGCGCTCCCTTTGACAATCTTCTACCATTGCTCTACGAAACCGAGACCGGAGAATTTATGAAGATCGACGTATCCAATGAAAATGCGTCCAACTGGATGCGCTTTGTCAGGCCTGCGACAACATACAAAGAACAAAATCTTGGAATTTGTCAGCAAGCTGAAGGTATAGTTTTTATCACGACGAGAAACATTTTACCGAGGGAAGAGTTGAGAGCCGGGCCTAATCCAGAATACGCGATACGCCGAAACTTGCCAATTCTCCAGCCTGAAGTGAAAAACGAATCTAGTGACAAAAACGTATGGCCGTGTTTCGAGTGTAATCAGCGCTTTGTAACTTCCGAAAAGCTTCAAAAACATCTGACCGttcatgaaaatacaaaaacggaAAGCAAGTCAAGAATAAAACGCAGAAAGGTAGCCGCCGTTTCCACAAACAAACTGTTAAAAGTCGTCGATGGCCAGACACTGCTATACACTTGTCCGCACTGTCCGAAGGTATTTCCACGAAGTTACAGTCTGAAGCGACACTTGGTGATACATCCGGGCGCGAAAGCACCGCGATACGAGTGCTCGTCGTGCGGAGAAAACTTTTTACATCCTTACAATCGCAGTCGACATATGAAGATATTTCACGGTGGCGGAACGAAGGAAAAGGAAAATTCTCGACAAAATTCAACCGAGTGGACATGCTCGACGTGTAATCTCATATTTGGCAAGGCGAGTTTACTTACTATACACACTTTGGCCCACTCGAGCAAGTCCGTCGTCGGTGAAACCTTCGCAAATCAACGTTGTCCGGAATGCAACGAGCAATTGAAAACACGCGGTGAATTGATAAGTCATGTATCCAAGCACGCTCGCTTGAAATTGCCAAAATCGACGAAAATGACACCACTCGCATCCAACAAATGTAGCATGTGTTACAAACGTTTCGCTACCAAAGTCCGATTACAGCAGCATTATTTGGTGCACGGTGCCGAGGACCAAAAGCCACTGCCATGCAACATTTGCGCCAAACGATTTATGAACAACTCTGCGCTCTCGTGTCATCTTAAAACTCACAGGGAAGACAAACAGATATTCGAATGTCCAATGTGCCGAGAGCTTTTCGATCAGGTATTAATGTTAAAGGATCATATCGAAAGACATCGAAACGAAGACGAGACTTTCACTTGTCCCCATTGTCCTCGAAGCTTCGCCAAGTATTCGGTTATTCGTAAGCACATAAGAGCTCATCACTGTGAACGAAAGCACAAGTGCCAATTTTGCGCAAAGCCATTTCCCACTGTCGACAAACTGCGAATGCATTTGCTACGGCATTCCGACCACAGAGAATTTCACTGTGCAAACTGCGAAAAACGATTCAAGCGCAAAGACAAACTCAAGGAACACATGACGAGAATGCACAATGCCCAGAGAGTCAAGCGCGATCAGCTATCGCACAACAATCAAATTAAGAAATTTGTACCCAAGGTTAATCCAACGGATTACAATCGTTTTGTCTACAAATGCCATCGATGTCTCGTTGGTTTTAAGAGACGAGGTATGCTCGTCAATCATTTGGCAAAACGTCATCCGGACGTTGCCCCTGAATCAGTCCCGGAATTGAACTTACCAATTTTACGTCAAACACGAGACTACTATTGTCAATACTGCGACAAGGTGTACAAAAGCAGCAGCAAAAGAAAAGCGCACATTGTGAAAAACCATCCTGGAGCAGCTCTACCTCCGAGCAATCGTCACAAAGAAACGGACATGATCGGTTTGCCGAATCCGACATTCAGTCAGACAGTAGGAAGCATAAGAACAACGCCACAGAGTTGTCAATGGTGTCACAAGCAGTATGCGAGTAAAGCAAAGCTTCTTCAACATCAGCGAAAGAAGCATTCGGCATTGATGGCGCCAGCGGATCAGGTACCGCGATCCCGAACTCGAGCTTTTCTCAAAGGTAGACAGACACAGACAAATAATATCGAGGACCGAGATTTTATCATAAGCGAATACGTAAATGATGGCGACGTAGACACGGATTTTACGAAACCAACGATAATCAAGATATCGAGTGGCGTTGACATCATAGCTAACGACCTCGAAATGGTCGCTCAACAGTTTGTACGTATGCGGGACATACGTTGA
Protein Sequence: MDSRGPPEGGPIDPLVSPIIDKSSEISDNWSASNLVASAFGDQSRKANNNTLLFVTVGYMEDQSRDYSKMFPAYEPVPFASHPPSPLSDFEQRVSTLDPNMSSAARYSPTPVPLPPLPFPNSVVVLQGPPSPFVTPPESNARSNINFGATQSCDQSIPQSDVVNDFVTNGNDSLASGVSGELILMQGANSELEGSATPLMLTGIPGAEFALTREFLVMQDDQINVMGALRNPEISGDPTVIVSQRICMEEENVVSECVPMPEKDAAGEDRPEVGMPEKETEKINMERKMVRRSRRRQINDKKTFWCEECGCHKAGGGGGGGGGGGGGVGGECTSSKNVRTIADEPVPSRAIATLPGSYLSINKLSASIPGGPDFGVFAKRNIRSRTQFGPIEGILWPYYGAPFDNLLPLLYETETGEFMKIDVSNENASNWMRFVRPATTYKEQNLGICQQAEGIVFITTRNILPREELRAGPNPEYAIRRNLPILQPEVKNESSDKNVWPCFECNQRFVTSEKLQKHLTVHENTKTESKSRIKRRKVAAVSTNKLLKVVDGQTLLYTCPHCPKVFPRSYSLKRHLVIHPGAKAPRYECSSCGENFLHPYNRSRHMKIFHGGGTKEKENSRQNSTEWTCSTCNLIFGKASLLTIHTLAHSSKSVVGETFANQRCPECNEQLKTRGELISHVSKHARLKLPKSTKMTPLASNKCSMCYKRFATKVRLQQHYLVHGAEDQKPLPCNICAKRFMNNSALSCHLKTHREDKQIFECPMCRELFDQVLMLKDHIERHRNEDETFTCPHCPRSFAKYSVIRKHIRAHHCERKHKCQFCAKPFPTVDKLRMHLLRHSDHREFHCANCEKRFKRKDKLKEHMTRMHNAQRVKRDQLSHNNQIKKFVPKVNPTDYNRFVYKCHRCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRHKETDMIGLPNPTFSQTVGSIRTTPQSCQWCHKQYASKAKLLQHQRKKHSALMAPADQVPRSRTRAFLKGRQTQTNNIEDRDFIISEYVNDGDVDTDFTKPTIIKISSGVDIIANDLEMVAQQFVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01207577;
90% Identity: -
80% Identity: -