Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453036.1:20550901-20554881[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.12 16 7.0 2.0 1 23 436 459 436 459 0.96

2 13 0.0041 0.53 11.6 0.2 2 20 496 514 495 516 0.90

3 13 0.00032 0.041 15.1 1.7 1 23 547 570 547 570 0.94

4 13 0.00073 0.094 14.0 0.5 1 23 583 606 583 606 0.94

5 13 0.00043 0.056 14.7 2.4 1 23 632 655 632 655 0.96

6 13 0.91 1.2e+02 4.2 4.3 1 20 667 686 667 691 0.92

7 13 0.0013 0.17 13.2 2.9 1 23 704 726 704 726 0.97

8 13 3e-06 0.00039 21.5 0.9 1 23 771 793 771 793 0.99

9 13 9.3e-08 1.2e-05 26.2 0.1 1 23 799 821 799 821 0.99

10 13 0.017 2.2 9.7 1.7 1 23 827 849 827 849 0.95

11 13 0.0031 0.4 12.0 4.2 1 23 855 877 855 877 0.99

12 13 2.1e-06 0.00027 22.0 0.9 1 23 883 905 883 905 0.99

13 13 2.3e-05 0.0029 18.7 1.3 1 23 911 934 911 934 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.12	16	7.0	2.0	1	23	436	459	436	459	0.96
2	13	0.0041	0.53	11.6	0.2	2	20	496	514	495	516	0.90
3	13	0.00032	0.041	15.1	1.7	1	23	547	570	547	570	0.94
4	13	0.00073	0.094	14.0	0.5	1	23	583	606	583	606	0.94
5	13	0.00043	0.056	14.7	2.4	1	23	632	655	632	655	0.96
6	13	0.91	1.2e+02	4.2	4.3	1	20	667	686	667	691	0.92
7	13	0.0013	0.17	13.2	2.9	1	23	704	726	704	726	0.97
8	13	3e-06	0.00039	21.5	0.9	1	23	771	793	771	793	0.99
9	13	9.3e-08	1.2e-05	26.2	0.1	1	23	799	821	799	821	0.99
10	13	0.017	2.2	9.7	1.7	1	23	827	849	827	849	0.95
11	13	0.0031	0.4	12.0	4.2	1	23	855	877	855	877	0.99
12	13	2.1e-06	0.00027	22.0	0.9	1	23	883	905	883	905	0.99
13	13	2.3e-05	0.0029	18.7	1.3	1	23	911	934	911	934	0.96

Sequence Information

Coding Sequence: atgCTGACGTTGATTCTGCAGACTCAAGAGGgacaaaaaatcgaattgaacGTGCAGCCGGAAGACACATTCGCTGATTTAAAGAGCCAATATCCCGACAACGATGGCCAGTCCGATTCTCTCGCACAACTTATTACAAATGGAGCCAACGTGccggaaaatacaaaaatattcgaCTATGTCACTGACAGCGCTCGCGAATGGTTCAGCGCAGACAACAGCATGGACATTGAAGACAACGCCGCTGATCAGTCTGCAACTATtgatacagaaataaaaaaatgctgcgCACAAGGCTGCGCAAATTCTAATGTAACGACACCTGGAAAACCATTTTTCACTGTGCCTACAGACCACGATAGgCTCTCAATGCGCCTCATAGAAGTGGGCAGTTCAGAACTGTACAATCAGATTGTTGCTCTAGATGGAGAAAGCACACAGAAGTATTTTTTGTGTGATAGTCACTTTAGTGATGAAACACTCTCTTTACCTCCACTCTGTGCTGCAGAACAGTCTGCAGTTTCACTTCTCAAGCCCAAAAACGAAAGAATATGGAGAAATACAAAGGAAACAATACTAAGTAGAGAGAACGAAAATTATGAGCTTAAGGAAGTTGACttcgaaaaggaaaaaaattccgtgcTTCAACTATCGGATATTATTAAGGATGTTGAACATCCCGGAATTCTCTGCCGTTTGTGTGGCGAACCGACTGCCAATCCGATTCATCTTTACGCTCAGGACGAAGAAGGCGAGGCGTTGAGCTTCGCTGATAAAATCAATTTGTGCCTTCCTGTTACGGTTACCGTAACAGATCCACTACCAAAGCAAATTTGCGAAGAATGCCAAAGAAAGCTCGAAACTTGTCACGAACTCGCATTGTCTTCATTGCAGACGGAAGACAAGCTCATGCTTCTTCTGCGACAACAAAAGCTGTGCGTTAATAATACTACAGACCAGCAGTGTCCTCTGTGCCTCGAAGGCGACAtgcaaatgaaaaagaaaaagaagagtgGTATTTATCGAAAAGACGATAAAAAGCCAAGCGAATCCGTGGAATCGACGTGGAGCGAGAAAATCGTTTCGACCAATAGCAACGATCTAGAATCGAGTGAAATCAATTTTCCGCTGCTGAACGATTCACTTTCCAAATCGGCCGAACCGATGAATTCGTCAGAAGATAACAACGAAAATTGTTTGCCTTCGCAACCAAAGGGCGATTTTCCTTGTTCCATTTGCTCGGCAAAAATAAACTCTGCATCAATACGCACTCACGATTGTTCTCTAGAAAATCCAGACTCAACTTACAATTGCTATATTTGCTCGAACACAAATTTCGTTTATCCTCACGAGCTCGAGTTGCATTATCGTCGCCACGGTTTATTTGAAGGTAAATTTACCTGCGATTTATGTCGCTACGAGTGTGAAGAGCTTGCTGACGCGGAGGAGCACGTAAAGCTATGCAGACCCGAATTTTGGGAGATCCGTTGCGAAATTTGCGACAAAACATTTCCCACCGCTGAACTGATAAACGATCACGAATGTTACCGAATGTCCTTCGATCTGCAAGTACCTGAAACACAAACTGACGAGAAATCGTCGGCAAAACCTAAATGCCGCAAGAAACAACTAGTCCAATACAATTGTTTCTTCTGTCAAAAAGAATTTCCGCGTAAGAAATATCTTAAAGTTCACATATCGGCATCGCACGCTGAAGAAATGAATAATCCGCTGTCCTCAAAATGCTACAAATGCAAAAAGTGCAACGAGGCATTTGCTCGAGAGACCGACGCCCAATCGCACATCACGCTTCGTCATCTCGAGCCTTTTGCCAATTGCGATTTTCCTGCTGGTCAGGAATTCACACCCGAAGAATTAACGGTCTCGCGTTTATACGTTTGCGAATTTTGCGAGCGTTGCTTCACGATGCCGAGCTCTCTTCACGATCACCGTGAAATCGAGCACGACGACATAAGAAATACGAAGAGCACGACGACATACACGTGCACTTGTTGCGATAGTGTATTCAATTCTCACAGACAACTGACGAATCACAAGAGCGGAGATTCTCATCACAAACCTTTCAATATTGTCGGTGTGCGGCTGTTTTACGTTTGCAAATATTGCGACAAGATGTTTCTACATTATTCCAGCCTATCGAGCCACGCTCTTCGTCATGAGGAGAACGACGCGCCTTATCTTTGCAGGCCTTGCAATGTTAATTTTGAAAGTTACAGAGAAATAGCGGTGCACAGAGACATCGCACATCCTTATCAGTCGACGATCCAACACGAAAAGTCGAAACGTTGTTACAAGTGTCAGTACTGCCAGAAACAATTTAGTTACGAAGTTGCTCTAGTTAAACACATCAGAATACACACCGGTGAAAAACCGTACAAATGCCCGATTTGCGGCAAAGGATTTGCGCAGAGCTCGGGTTTGAACACTCATGTGAAAATTCACTCGGATGTGAGACCGTACACGTGTCCGAAATGTCCGCGCGCTTTCAAAATAAAAGGCGATTGCGATAATCACGTTAAGAGACACTCCGGAAATCGGCCCTACAAGTGCGAATTTTGCTCGAAAGCCTTTATGACTCAACATGTCTTCAGTCAGCATCGCAGAATTCACACAAACGATCGACCTTATAAATGCGACGTTTGCGGTGAAGCTTTCCGGAGATCGCACGTTCTTACCGTTCACAGGAGAATTCACACGGGCGAAAAACCGCACGTTTGCGATCTCTGCCCGAAAACCTATCGGCAGCGTGGCGATCTTGTGAAGCACAGAAAAGTTCAACATGGCGTTAATACGGCCAATCTTGCCAAACACACTTTTACCGATAATACGTCCGAGAATTCTTACGATTCTATTGCCAATACGGGCGGCAAAATCGCTCATCGTACAGCGTCCGCCAACTCCTCGCTGCTCTTGCCGCTTTGA
Protein Sequence: MLTLILQTQEGQKIELNVQPEDTFADLKSQYPDNDGQSDSLAQLITNGANVPENTKIFDYVTDSAREWFSADNSMDIEDNAADQSATIDTEIKKCCAQGCANSNVTTPGKPFFTVPTDHDRLSMRLIEVGSSELYNQIVALDGESTQKYFLCDSHFSDETLSLPPLCAAEQSAVSLLKPKNERIWRNTKETILSRENENYELKEVDFEKEKNSVLQLSDIIKDVEHPGILCRLCGEPTANPIHLYAQDEEGEALSFADKINLCLPVTVTVTDPLPKQICEECQRKLETCHELALSSLQTEDKLMLLLRQQKLCVNNTTDQQCPLCLEGDMQMKKKKKSGIYRKDDKKPSESVESTWSEKIVSTNSNDLESSEINFPLLNDSLSKSAEPMNSSEDNNENCLPSQPKGDFPCSICSAKINSASIRTHDCSLENPDSTYNCYICSNTNFVYPHELELHYRRHGLFEGKFTCDLCRYECEELADAEEHVKLCRPEFWEIRCEICDKTFPTAELINDHECYRMSFDLQVPETQTDEKSSAKPKCRKKQLVQYNCFFCQKEFPRKKYLKVHISASHAEEMNNPLSSKCYKCKKCNEAFARETDAQSHITLRHLEPFANCDFPAGQEFTPEELTVSRLYVCEFCERCFTMPSSLHDHREIEHDDIRNTKSTTTYTCTCCDSVFNSHRQLTNHKSGDSHHKPFNIVGVRLFYVCKYCDKMFLHYSSLSSHALRHEENDAPYLCRPCNVNFESYREIAVHRDIAHPYQSTIQHEKSKRCYKCQYCQKQFSYEVALVKHIRIHTGEKPYKCPICGKGFAQSSGLNTHVKIHSDVRPYTCPKCPRAFKIKGDCDNHVKRHSGNRPYKCEFCSKAFMTQHVFSQHRRIHTNDRPYKCDVCGEAFRRSHVLTVHRRIHTGEKPHVCDLCPKTYRQRGDLVKHRKVQHGVNTANLAKHTFTDNTSENSYDSIANTGGKIAHRTASANSSLLLPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00343371;
90% Identity: -
80% Identity: -