Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453038.1:5495985-5510786[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 0.064 8.3 7.9 4.3 1 23 407 429 407 429 0.98

2 19 0.00017 0.022 16.0 0.8 2 19 465 482 464 486 0.90

3 19 0.00025 0.032 15.5 4.5 1 23 492 514 492 514 0.98

4 19 0.0034 0.43 11.9 0.1 3 23 522 543 520 543 0.92

5 19 1.7 2.1e+02 3.4 1.9 1 23 550 573 550 573 0.97

6 19 8.6e-05 0.011 16.9 0.8 1 23 577 599 577 599 0.97

7 19 0.0021 0.27 12.5 0.5 1 23 605 627 605 627 0.98

8 19 1.3e-05 0.0017 19.5 0.8 1 23 633 655 633 655 0.97

9 19 0.0026 0.33 12.3 0.1 1 17 660 676 660 677 0.90

10 19 0.24 31 6.1 0.7 3 20 1076 1093 1074 1096 0.91

11 19 0.57 73 4.9 1.5 1 23 1102 1125 1102 1125 0.97

12 19 6.6e-05 0.0085 17.3 0.2 1 23 1131 1153 1131 1153 0.98

13 19 0.89 1.1e+02 4.3 0.6 1 23 1159 1181 1159 1181 0.92

14 19 0.00048 0.062 14.6 0.2 2 23 1188 1209 1187 1209 0.96

15 19 0.036 4.7 8.7 1.3 3 23 1218 1239 1217 1239 0.95

16 19 0.00015 0.019 16.2 5.5 1 23 1243 1265 1243 1265 0.98

17 19 0.2 25 6.4 4.9 1 23 1270 1292 1270 1292 0.98

18 19 6.4e-07 8.2e-05 23.6 0.4 1 23 1298 1320 1298 1320 0.98

19 19 0.00019 0.024 15.9 1.5 1 21 1325 1345 1325 1346 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	0.064	8.3	7.9	4.3	1	23	407	429	407	429	0.98
2	19	0.00017	0.022	16.0	0.8	2	19	465	482	464	486	0.90
3	19	0.00025	0.032	15.5	4.5	1	23	492	514	492	514	0.98
4	19	0.0034	0.43	11.9	0.1	3	23	522	543	520	543	0.92
5	19	1.7	2.1e+02	3.4	1.9	1	23	550	573	550	573	0.97
6	19	8.6e-05	0.011	16.9	0.8	1	23	577	599	577	599	0.97
7	19	0.0021	0.27	12.5	0.5	1	23	605	627	605	627	0.98
8	19	1.3e-05	0.0017	19.5	0.8	1	23	633	655	633	655	0.97
9	19	0.0026	0.33	12.3	0.1	1	17	660	676	660	677	0.90
10	19	0.24	31	6.1	0.7	3	20	1076	1093	1074	1096	0.91
11	19	0.57	73	4.9	1.5	1	23	1102	1125	1102	1125	0.97
12	19	6.6e-05	0.0085	17.3	0.2	1	23	1131	1153	1131	1153	0.98
13	19	0.89	1.1e+02	4.3	0.6	1	23	1159	1181	1159	1181	0.92
14	19	0.00048	0.062	14.6	0.2	2	23	1188	1209	1187	1209	0.96
15	19	0.036	4.7	8.7	1.3	3	23	1218	1239	1217	1239	0.95
16	19	0.00015	0.019	16.2	5.5	1	23	1243	1265	1243	1265	0.98
17	19	0.2	25	6.4	4.9	1	23	1270	1292	1270	1292	0.98
18	19	6.4e-07	8.2e-05	23.6	0.4	1	23	1298	1320	1298	1320	0.98
19	19	0.00019	0.024	15.9	1.5	1	21	1325	1345	1325	1346	0.95

Sequence Information

Coding Sequence: ATGGAGATGAAATTGGAGGAGGCGCAAGTCTGCAGACTTTGCGGACAATGCGAAAGCATCTACATCGACGTTTTTGGCGAAGAAGGCACAAAACGATTTCTGGGACTGAAAATACACACGAAAATTAACATTGTGATAGATGAGACGGACCCTCTGCCCAAGGCGATATGTGTTCAGTGTCTGGGCAAGCTCGAATTCGTTTGCGACTTTCAAGAGGAGTGTCTACGCACCCAAGAAGTATTGCGCGATCGATACAATCTACCGCCGTTATCAGACGTTGACGAAATAAAAGACGAGGATGCATCAGTGCCTGCGAGTACGTCAACAAACAACAACAGTACCGACAAAAACCTGAATCCGCCATTGGAGACAGAAATCGAGATAACGAACGCCTACGAATCGGCGGAAGCGGAAAATGCCGGAAAGCCACGAAGAAAAACGCGTTGTCTTCGTCGTTCGCGTTCGCGCAGTGAAAATGAGAAAACTCTCGGTGAAAATCCTCGGGAACCTGGGGAGAACGTTAACAAGCGTTGGCTCAGAAGTCGAAATTCCACAGCGTCTTCAGCgacgacaacaacaacgacaaccACGACAACAACTGCTAATCCAAAATCCTCAGATTGCTGCAAAACGACAAATGCCTCGATAGCAAGTAGATTACGAAGTCAGAGTGACTCACCGGAAAAAAAAGACTCGGCGACAAAGGAACCGGAAGTTCCAAAAGAAACCCCAGATAAATCAACGGAAGACACGAGTATGATACAAATTCCCACTTCGgcgttgaataaagttttaacCGTCGTCTCAACTTCTCCGGACATGGAAGTATCGGTAAAAGAGTCGACAAATCGTAACGGCGACATAGAAGACATAAGTTTCACGTTAGAACTTCGCCGTAAAAAACGCGATTCCGAATTCATAACCGTGCTAGCAAAAGTTTTTCCTGATCAAGGTTCTTGTCTCGTGGGTTCGGGAATAATCGGGCTTTTGGAGAACGAAAATAACGTGGAGATCGACAAAATTGTAAGCACTATTTTAAACGGCGGCGCAGGAAGAACGAAAAATGGGACAAGCGGATTAACGAAAATTTTAGAGCTCGACGAGATGGAAAAGCGCTTGAGCGCTTCCCAAAATCCCGAGGAGCTTTTTCGCATCGACGGCGAAGAGATTCGCGTCGACGACAACGTCGAGCACGTTACCGTCGATAATCAGTCCGGATATTCGTGCAAATTGTGCCGAAAAGTCTACGAACGTCGCGACAAATGCACGGTTCACGTTAAAACACATTTAGGCATTAAACAATACGCCTGCACGTTGTGCTGCGCTAAATTTGTCTGCAAATCCGATGTTATGAAGCATATTAGGTGCTCACACACTAATCCACGTCCTATGCAATGTCCCAAGTGCCCAAAGAGATTTAGATCGAAATTCGATCTAACCGAACACGACAATGTTCATAAAGGCATAAAACCTTATCGCTGCACCGATTGCGGACAAAGTTATCACCACAAAGTCTCACTTCAAATGCACGTTAAGTCGCATTTACCGCCGCAAAATTTAGCCTGCGAATATTGCGGCAAAATATTTCCATTCCGCACTCGATTATTGTCGCATATCGGAAGCGTTCATCTTAAAAATCGGCGGAACTTCCGGTGTAGATTTTGCTACAACCTTTACTCGAGTCTTACTGTACTCAATGATCATATTAAAACCCGACACGCGACCACTTACACTTGCGATGTTTGCTCAAAGACATTCAAAGTCGCTTCCAAATACAAAGCTCACGTTTTGCAACACTCCAATCCTAAACCATTCGTCTGCAATGTCTGCAATAATAGATACGCCTCGAAAGCCTTTCTCAATGAACATCTCCTTAAACACGAAGGATTGAGGAAACACGTTTGCCCATTGTGCGGCGCCACTTTCGCTCAGGCCAGTCATTTGGCCGCTCATCGTCATGTTCACGGCGAAAAAACTCACGCTTGTCCCGAATGCGGCAGGAAATTTAATCGCAGGGATAATATGAAGATTTCCGAAACCGATGGATTGTCCCACAATGTGTGCATGAGATGCATCGGAACTCTGGAGTTTATTGAAGATTTTCATCAGAATTGCCACATTACGCAACAAAAATTCATCGAGGCTaagAAGGCGAAGAAATGTCCAAAGATAAAAGAGAATTTTGCGCCCGATTTGGAAGACGACGTGGAATCCGACAAAGAAAACGCTTCGCCAAACGTAAAAATAGGATTAAAGCGAAAGCGTCAACCAATCAACCATGAAAAAACCAAAGCAGAAAAACCTAAGCCTCTCAGTATAAAAACCATGAACAAGGAAGACTCCgaaaaatcccgagttgataAGCAAATTAATAAGAGCCTCACTCAAAAAACTGTACACGTCTCAATTGAACCTTGCGATGCAGTTAAATCAActtcttcgattacaaatgccaaaTGCGACAATAGTACAAAGACACAAACCtacgaaaaaaaggaagagaaaCCTTCGACTTCCCGAGATTATCAATCCACAGATCGAAAAAGCAAAACTCGAGGTGTCAGTCGAAATGGCCTCGTAACAAAAAAACCCCAAAGCCAAACAAACACTCCGACTAATTCACCAAAAAGTAAACAAGTTCCCGTCATCGTGAAGctggaaaagaaagaaaacctCGAGGTTTCTGATTGCAATACTCCAATAACTGTAAATCAGGGAAAATCTAATAAAGACGTTTGGTTGGCTAACGTAGTGAATTTACCGGAAGCAGATAAGCCCAAATCAACGAGATCGGAGAAACAACACGATCAGTGTCCAACTGCAGGCGATGAAGCTGAAGAGAGCTCAGAAAAAACACCGGAAAAGAGCTCGACGCGTTCACCCGGAAAGGAAATAACTTTAACAGAAAACGTCCGAAAAAGTGTGATAGAAACGCCGCAAAAAGCTTTTGACACTATAGAAAAATACGAAACTCCTTGCGGAAGAGAAACGCGACAGTCGAGCtccggtttgaaaaaaaataaagccccTGCTGAAGAGGTTGCTGAAGAAGGGGGAAACGAAAGCGAAAGCATCGAATGTCGAAAGAAATTCGCAAGAATTTCGGATTTGATCAGCGAAGAGCAAAAACAGGCTATAGAAACTTATTACAAGGTTGATATGTCCGTCGTTGACGGAGAAGTCGTCACAGAAAAGATCATTTTCctcgagaaaaagaaattcgGATGTAAAATTTGCGACGCTACTTTTCCTCGACAGGATAAGTGTCAGGTTCATATTTGGGGACATTTGGAGATGAAACCTTTTAAGTGCAATGCTTGCGGCTTTGCTACTGTTACTGTGAGCAATATTCGATGCCATATTCGAAAAAGTCACCTCAAAATTAAACCTTATGCTTGCGAACTGTGCGAGAAAAAATATGTCACTGCTTTTCTTCTCGAGGAACACATGAACACGCACACGGGATCGAGACCTTACAGCTGCACTGTCTGCGATTTTACGAGCGCTAGTAGACAAGTTCTTAGCTATCATAATGTTACTCACAAACCGACCAAGGATATAACATGTGATGAGTGCGGCAGGCAGTTCTACTCAAAGGCCAGAATGCGAGCACATATGGTAATCCACAACAAGGACAGAGCTGACAATATGTGCAAATTGTGCTCTATATATTTGTGCAATAACGAGGCTCTTCAGAGACACATTAAGAACGTTCACTCGAAGCATTACTATTGTAAATTTTGCGACAAGCGTTGCAAGTCAAAAAAAGCACTGAACAATCATCAAAACGTTCATTACGCTGCCAAATACAAGTGTCATCTCTGCTCGAACGTCTACAAAAGCAGCCACATACTCAAAGAACACCTTTTAAAACACGAGGGCATAAGAAAGTACAAGTGCACCGTTTGCGAAAAAGATTTCGCTCAACAATCGCATCTCGCAGCTCATATGGCTGTTCACAGTGATAGAAGATTTTACTGCCCTGGATGCAATCGTGCATTTAATCGTCACGACAACATGAAAATGCACACAAAACGATGCGATGCCTTCCTCGCTAATCCGGAACTCCAATCTCTTCTGACAATCCGAAGAAGCAGAAGTAAGCCAACCGAAGAATTGCCAAAAAGTCCAAATCTCGATTCTAGTTCGAAGGTTTCAGTTGAAACCGCGAATACGATCGAAAATCGTGAAAGACCTTCGACCGACGGAATTTTCCTGAAGGCCCAACTCGTCGAGACTGATTCGTGA
Protein Sequence: MEMKLEEAQVCRLCGQCESIYIDVFGEEGTKRFLGLKIHTKINIVIDETDPLPKAICVQCLGKLEFVCDFQEECLRTQEVLRDRYNLPPLSDVDEIKDEDASVPASTSTNNNSTDKNLNPPLETEIEITNAYESAEAENAGKPRRKTRCLRRSRSRSENEKTLGENPREPGENVNKRWLRSRNSTASSATTTTTTTTTTTANPKSSDCCKTTNASIASRLRSQSDSPEKKDSATKEPEVPKETPDKSTEDTSMIQIPTSALNKVLTVVSTSPDMEVSVKESTNRNGDIEDISFTLELRRKKRDSEFITVLAKVFPDQGSCLVGSGIIGLLENENNVEIDKIVSTILNGGAGRTKNGTSGLTKILELDEMEKRLSASQNPEELFRIDGEEIRVDDNVEHVTVDNQSGYSCKLCRKVYERRDKCTVHVKTHLGIKQYACTLCCAKFVCKSDVMKHIRCSHTNPRPMQCPKCPKRFRSKFDLTEHDNVHKGIKPYRCTDCGQSYHHKVSLQMHVKSHLPPQNLACEYCGKIFPFRTRLLSHIGSVHLKNRRNFRCRFCYNLYSSLTVLNDHIKTRHATTYTCDVCSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHVCPLCGATFAQASHLAAHRHVHGEKTHACPECGRKFNRRDNMKISETDGLSHNVCMRCIGTLEFIEDFHQNCHITQQKFIEAKKAKKCPKIKENFAPDLEDDVESDKENASPNVKIGLKRKRQPINHEKTKAEKPKPLSIKTMNKEDSEKSRVDKQINKSLTQKTVHVSIEPCDAVKSTSSITNAKCDNSTKTQTYEKKEEKPSTSRDYQSTDRKSKTRGVSRNGLVTKKPQSQTNTPTNSPKSKQVPVIVKLEKKENLEVSDCNTPITVNQGKSNKDVWLANVVNLPEADKPKSTRSEKQHDQCPTAGDEAEESSEKTPEKSSTRSPGKEITLTENVRKSVIETPQKAFDTIEKYETPCGRETRQSSSGLKKNKAPAEEVAEEGGNESESIECRKKFARISDLISEEQKQAIETYYKVDMSVVDGEVVTEKIIFLEKKKFGCKICDATFPRQDKCQVHIWGHLEMKPFKCNACGFATVTVSNIRCHIRKSHLKIKPYACELCEKKYVTAFLLEEHMNTHTGSRPYSCTVCDFTSASRQVLSYHNVTHKPTKDITCDECGRQFYSKARMRAHMVIHNKDRADNMCKLCSIYLCNNEALQRHIKNVHSKHYYCKFCDKRCKSKKALNNHQNVHYAAKYKCHLCSNVYKSSHILKEHLLKHEGIRKYKCTVCEKDFAQQSHLAAHMAVHSDRRFYCPGCNRAFNRHDNMKMHTKRCDAFLANPELQSLLTIRRSRSKPTEELPKSPNLDSSSKVSVETANTIENRERPSTDGIFLKAQLVETDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00653060;
90% Identity: -
80% Identity: -