Tlin016356.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Tromatobia lineatoria
Gene Symbol
SCRT1
Assembly
GCA_949699805.1
Location
OX453042.1:9801108-9802916[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 6.7 8.6e+02 1.5 0.3 1 15 124 138 124 142 0.79
2 11 1.6e-05 0.0021 19.2 0.2 1 23 235 257 235 257 0.96
3 11 0.00089 0.11 13.7 1.6 1 23 263 285 263 285 0.91
4 11 4e-06 0.00052 21.1 0.7 1 23 290 312 290 312 0.99
5 11 8.6e-05 0.011 16.9 0.1 3 23 320 340 318 340 0.97
6 11 1.9e-07 2.5e-05 25.3 0.6 1 23 346 368 346 368 0.98
7 11 0.00016 0.02 16.1 0.3 1 23 375 397 375 397 0.93
8 11 9.4e-06 0.0012 19.9 1.0 2 23 404 426 404 426 0.98
9 11 0.00013 0.017 16.3 2.7 1 23 432 454 432 454 0.98
10 11 5.4e-06 0.00069 20.7 1.1 1 23 460 483 460 483 0.95
11 11 0.0017 0.22 12.8 3.7 1 23 516 538 516 538 0.96

Sequence Information

Coding Sequence
ATGGAGTTGGAAGAGAGTCCAAGGATAGATTTACAGAATTTGAAGTGTAATTCAAAATCTGAAACGCTAGAAGAATCTCAACTTCATTCAGATCAAAGTATACATGAATCTGCACACGAAGTCACGAACCCTCAACCAACAGAGGGCAACATAGCTGAACAAACAGATTTATTACAATCTAACGAGGACGAAATTCCTGtagaaaatttacaaataaattcagTCATAGATGAGACAATTTCCACTAATATAGAATTAGCAAATATAGAAAGCAAATCACCTAGCCAAAGGGATGAAAAACAAGATTACGAAGATGGTATTTCCAGTAAAGTAGACGCAAATACCGCCGAAGGAATTCATGATATTAAGTACAAATGTTTCCGTTGCGATGGTATATTTCCGGATTTCGATAGTGCGTCGGTTCATTGCGCGGAATGTTCGTCTTTGGAGGAGGACGAAGTTAACGCGTCGATAGAGCAAGAACCTATGGAATCCCTCGAGGAAACTCTCAAAGAGCGGGTAGAAAATATAGGAACAGAAGGAATTGTGGACGAATCTTTGAATTCTCAGACACGATCACAACCGATAGACACAATGAACCAAAGGAAAACGGTACTTTTCTACGGCAACGAGGATTCAAGAGCCTCAAAACCAAAATCTTCCCCGAACCGCAGAAGCAaagtgcacgaaaaaaaatccgagcaTTCTTGCCCAAACTGCGATAGCGTTTTCTCAAGTCCCGCTCTATTGAAGAGACATTTAGTAGTTCACACCGGAGAGCGACCCTTCGAATGTCCCATATGTAAAAAGCGTTTTTCCCAAGTCggtcaattaaattttcacaaaaacttcCACGAAAATCCGCGTTACCGTTGCAATGTATGCAAAAAGCCATTTTTACGGCCTAGCGACATTGAGAAACACATGAGAACGCACACGGGCGAAAAACCTTACGGCTGCAGCGTTTGTTCGAAATCTTTTGCCCAATTAGTGGCTCTGCAACAGCACGAAAGAATTCACACCGGCGATAAGCCCTACGTTTGCGAAATATGTGGAAAAAGCTTCTCGCAAAAGGCCAATAAAACGAAGCACGTTAAGATTCACAAGGAGGGAGCGAAGCCGCATACTTGCGAAATATGCGGGCGAAGTTTTTCCGATTTGGAGGAAATGAGTCTTCACAAAGCCGGTCACGGCGGCGGAAAACCGAGGAAATGCAACTACTGCGAAGAGAGctttagaaaaatgtccgaATTGGCGCAGCACATAAGACGTTATCACACTTTCGAAAGACCTCACAAATGCGCTTTTTGTCAGAAGGCTTTTTATTCTATGTACAATTTAAAGCAACACGTTATGGTTCATACAGGCCAAAAACCTTACGCATGTTCGCAATGCGATTTAAAGTTTACGCAGAAAGGAAACTTGACGAAGCACGTCGAGCGAAAGCACGGTGAAAAATATGGGCTCGTTGTGGAGGGCGAGGAGGAGCAGAAAGAAGGCATTTTGATCCTGGTCGACAATCTACAGGACGATACGACTGATTTTTACGCTTGCAATAATTGCAATCTGAAGTTTCACGACAAAGACAAATTTCAGAGGCATTTAGATCAACACTCGGATTATGCGTTAGATAGTAATAAATATGTTGTTATTGAAGGCGTCGAAGAGAACGAACAAGAAATGCTGATTTTAACGAACGGTATTCCGGAAAATACCGTCGAACCTTTGGTAATTGAACGCGAGGAGACCGTTCAAGTGGAAATTGGCGAAgatcaaaataatttacaaatatacGAGATTAACGAATGA
Protein Sequence
MELEESPRIDLQNLKCNSKSETLEESQLHSDQSIHESAHEVTNPQPTEGNIAEQTDLLQSNEDEIPVENLQINSVIDETISTNIELANIESKSPSQRDEKQDYEDGISSKVDANTAEGIHDIKYKCFRCDGIFPDFDSASVHCAECSSLEEDEVNASIEQEPMESLEETLKERVENIGTEGIVDESLNSQTRSQPIDTMNQRKTVLFYGNEDSRASKPKSSPNRRSKVHEKKSEHSCPNCDSVFSSPALLKRHLVVHTGERPFECPICKKRFSQVGQLNFHKNFHENPRYRCNVCKKPFLRPSDIEKHMRTHTGEKPYGCSVCSKSFAQLVALQQHERIHTGDKPYVCEICGKSFSQKANKTKHVKIHKEGAKPHTCEICGRSFSDLEEMSLHKAGHGGGKPRKCNYCEESFRKMSELAQHIRRYHTFERPHKCAFCQKAFYSMYNLKQHVMVHTGQKPYACSQCDLKFTQKGNLTKHVERKHGEKYGLVVEGEEEQKEGILILVDNLQDDTTDFYACNNCNLKFHDKDKFQRHLDQHSDYALDSNKYVVIEGVEENEQEMLILTNGIPENTVEPLVIEREETVQVEIGEDQNNLQIYEINE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00343348;
90% Identity
-
80% Identity
-