Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453036.1:22785883-22790059[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00031 0.039 15.2 0.0 1 23 364 386 364 386 0.96

2 11 6.6e-06 0.00085 20.4 1.2 3 23 461 481 460 481 0.97

3 11 0.00012 0.015 16.5 0.2 1 23 487 509 487 509 0.98

4 11 0.00046 0.059 14.6 2.4 1 23 515 537 515 537 0.98

5 11 8.2e-06 0.0011 20.1 1.3 1 23 543 565 543 565 0.98

6 11 0.00032 0.041 15.1 1.3 1 23 571 593 571 593 0.98

7 11 1.7e-07 2.1e-05 25.5 0.5 1 23 601 623 601 623 0.98

8 11 0.0054 0.7 11.2 0.2 1 23 629 651 629 651 0.94

9 11 1.8e-05 0.0023 19.1 2.2 1 23 657 679 657 679 0.98

10 11 2.4e-05 0.0031 18.7 0.6 1 23 685 707 685 707 0.98

11 11 0.0014 0.17 13.1 4.3 1 23 713 735 713 736 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00031	0.039	15.2	0.0	1	23	364	386	364	386	0.96
2	11	6.6e-06	0.00085	20.4	1.2	3	23	461	481	460	481	0.97
3	11	0.00012	0.015	16.5	0.2	1	23	487	509	487	509	0.98
4	11	0.00046	0.059	14.6	2.4	1	23	515	537	515	537	0.98
5	11	8.2e-06	0.0011	20.1	1.3	1	23	543	565	543	565	0.98
6	11	0.00032	0.041	15.1	1.3	1	23	571	593	571	593	0.98
7	11	1.7e-07	2.1e-05	25.5	0.5	1	23	601	623	601	623	0.98
8	11	0.0054	0.7	11.2	0.2	1	23	629	651	629	651	0.94
9	11	1.8e-05	0.0023	19.1	2.2	1	23	657	679	657	679	0.98
10	11	2.4e-05	0.0031	18.7	0.6	1	23	685	707	685	707	0.98
11	11	0.0014	0.17	13.1	4.3	1	23	713	735	713	736	0.95

Sequence Information

Coding Sequence: ATGGCCGTTGTCGGAGAATTCGATTACTTGTGTCGGCTGTGCGCCACCAAGACCGGAATTCTCATGGGCTTACCGATTTTCGAAGCCGGCGAACGCATGAGAAACATCGACAAAAAGATTGCCGCTTGTCTACCAGTTCAGGTGTCGATGAGCGATCAGCTGCCAAAAGTCGTATGTGAACAATGCGCTTATAAGTTGGATCAGATGTTTGACTTTAGAGAAAAGTGTGTGAACACCGAAAATATGTTCATTGAGATGCTTAAGGAAATAAAGCAGGAAGATGGAAGAATAGAGCAGACGTTAAGAGACGTTGAAGAAATTTCGGTTATTCGTAACAGCATCGATAGAATTCATTGCAACATCACTGATATACAGAGTGGAATAGACAACATCACAAACAGTGAGTGCGGCAATCATGCAGAAGCCAGTGAAAACACTATGCACACAATGCAGGTGATGGACGAAATGGATTTGGCTGGAGGCGAACAGGTCGTCACTCAAGAGGAAATAGGACCTCAAGAAACCGACATTGAAGTAACAGGCATAGACTGTTTAGATGGTGATACCGTGAGAATGGTCGATGAACACATACGTGAAGTCTCTAATCACGAGATTGCAATGCATCTGGAGGGCGACATGACCGTCGTGGGAAATTTGACCGTTGACGATCATCTTAGTCAGCTTGGAATAAATTACGTAACAACTATCGGAACCGAGAGCCAGAGTCAGGAACAAATCGTCCATTACTGTGACAACGTCAAATACGAGAGTGTGACCGTGAAGGATGAGTATCAGAGGCTACAGGAGAGACTCACGGCAGAGAGTTCGCAGTCTACAAAAAATGACGTCTCGACTGACGGTTTTACCGCGTCGCATCCAGAACCCGGAAGTGAGCTCGAAGAGTCGTCAATCAGCGAAACCGAGAACCACGCGACAATAGAGGGTTTGCACTCCGACAACATGGTATTAACGTCCCATGTGAATTCCAAAGATTCCGAGATAATAGTCGAGTACACTAAATCGGCAAAAGACTCTGTGTTAGAAAATATACTTAATAATCCCACGTTCGACGAAACGGGATCGAATTGGTACGTGTGTCCTTTCTGTAACGAAGCGGCTACGGATCCGAGCAATCTCGTCACGCACCTCGATCAGCATTTTTGCTGTTGTCCTTGCGGTCTCTACTTCACGAGCGTCGAGGTTCTGACGCTTCACGAGGGAGAATGTGATCTGAATAAAAGAAGAGAAGAGATTGCGAAAGAAGAGAAACCGCCTCGCGAAGCCACGAACGCGCCTATAGAGTTGGAATCAATCCCCGAGGAAACAGCGGACGAAGCCAAGAAACAGCCGAACGTTCGGCAAAAATGGACGCCAAAAATTTGCGCCCAATGCGGCAAACAATACCGTACAAATTACAAGCTTCAGGAGCACATGCGAAAGCACACAGGCGAAAAACCCTTCCAATGTCTGCTGTGCGAAAAGGCTTTCAGAAGTAAAATCGGTTTGGCGCAGCACACAGCGACGCACACCGGTGAATTCGACTACAATTGTTCCACATGCGGCAAAGGTTTCCAGTGCAAAAGCTATCTCATTGTCCACCAACGCGTCCACTCCGATTTAAAGCCCTATCCTTGCAGCACTTGCGGCCAAAATTTCAAGACCAAACAATCGTTGCTCGATCATCAAAATCGTCATCTCGGGGTCAAACCGTACATGTGCGAAATTTGCGGAAGAGGTTTTATAACAAAGGGCTTATGCAAGAGTCACCAGAAGATTCATTCCGGCAAGGATAATCGTCAATATCCTTGCGAGGTTTGCAACAAAATGTTCGTCAGCAAAAGCTACCTAAACACTCATTTGCGTATTCACACCGGTGAAAAACCGTATTTATGTGAAGTTTGCGGAAAGGGTTTTCTCACGCGAGTCGATTTGAAAATTCACTCGACCATGCATACCGGAGAGAAGAGTTTCAAGTGCGATATGTGCGGCAAAGTATTTGCAAGACGCGCTGCGCTTCGTTGTCACAGAAGATCGCACACAGGTGAACGTCCCTATAGATGTGACGTTTGCGGCAAAACCTTCACTCAATTCAGCCCAATGGCGATACACAAACGTCTCCACACCGGGGAACGTCCTTACGAATGCGACGTATGCGGCAAAGCCTTCGTTTCCCGATCAACTATGATGTGCCACAGGAAAAAGCATCATTTGCCGATCACAGCGACAACGAAAGATGCTTCGGCGAATTGCGAGGAAAAAGATGCTAACGGAATCTCCGTTGAGGCTGTTGTTCACAGTGGAGGAGGCGACGATAGTGTTTCAATAAAGGCTGAATGA
Protein Sequence: MAVVGEFDYLCRLCATKTGILMGLPIFEAGERMRNIDKKIAACLPVQVSMSDQLPKVVCEQCAYKLDQMFDFREKCVNTENMFIEMLKEIKQEDGRIEQTLRDVEEISVIRNSIDRIHCNITDIQSGIDNITNSECGNHAEASENTMHTMQVMDEMDLAGGEQVVTQEEIGPQETDIEVTGIDCLDGDTVRMVDEHIREVSNHEIAMHLEGDMTVVGNLTVDDHLSQLGINYVTTIGTESQSQEQIVHYCDNVKYESVTVKDEYQRLQERLTAESSQSTKNDVSTDGFTASHPEPGSELEESSISETENHATIEGLHSDNMVLTSHVNSKDSEIIVEYTKSAKDSVLENILNNPTFDETGSNWYVCPFCNEAATDPSNLVTHLDQHFCCCPCGLYFTSVEVLTLHEGECDLNKRREEIAKEEKPPREATNAPIELESIPEETADEAKKQPNVRQKWTPKICAQCGKQYRTNYKLQEHMRKHTGEKPFQCLLCEKAFRSKIGLAQHTATHTGEFDYNCSTCGKGFQCKSYLIVHQRVHSDLKPYPCSTCGQNFKTKQSLLDHQNRHLGVKPYMCEICGRGFITKGLCKSHQKIHSGKDNRQYPCEVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRSHTGERPYRCDVCGKTFTQFSPMAIHKRLHTGERPYECDVCGKAFVSRSTMMCHRKKHHLPITATTKDASANCEEKDANGISVEAVVHSGGGDDSVSIKAE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01207572;
90% Identity: iTF_00653042;
80% Identity: -