Tlin021135.2
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453046.1:4670221-4679891[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.3 4.2e+02 2.5 4.3 1 10 38 47 38 59 0.80 2 14 0.0013 0.16 13.3 0.5 1 23 67 90 67 90 0.96 3 14 0.035 4.6 8.7 0.0 1 20 134 153 134 155 0.95 4 14 3.4e-05 0.0044 18.2 0.7 1 21 197 217 197 218 0.95 5 14 0.00078 0.1 13.9 1.3 1 23 226 249 226 249 0.96 6 14 2.8e-05 0.0036 18.5 1.2 1 21 309 329 309 330 0.96 7 14 0.00038 0.05 14.9 3.2 3 23 340 361 338 361 0.96 8 14 0.00023 0.03 15.6 0.1 1 21 418 438 418 439 0.96 9 14 0.00012 0.016 16.4 2.7 1 23 447 470 447 470 0.93 10 14 2.7e-05 0.0035 18.5 0.5 1 21 527 547 527 548 0.94 11 14 6.2e-07 7.9e-05 23.7 1.6 1 21 567 587 567 588 0.96 12 14 0.00015 0.019 16.2 1.4 2 23 598 619 597 619 0.94 13 14 0.00078 0.1 13.9 0.4 1 22 708 729 708 729 0.95 14 14 0.012 1.6 10.1 6.5 1 23 738 760 738 761 0.94
Sequence Information
- Coding Sequence
- ATGACGTCTATACCCATCTTCGAATTATTACAACCGGAACTCAGTGTAGTATTGCAAAAAATCGATTGCGACATCCAACCACATATCCAAATCAGCAGAGTCGAGAAGTTGTACAAGTGCGATCGGTGCAAGAAATCATTCTTGACTCTGCGGGGACTCCGATGTCATCATTTGAACTGCGGCAAAGAAAAATTGCGATACTTTTGCCGATTGTGTAGCTTAAGATTTACGAAAAGCATCAACTTGGCTGCTCACGTTAAAAGTGTGCACAAGTTAAAAGGCAAAAAAGATCAACGCTTAAACAGGAATTCAGCATCCACCAACAAAACGCAAACAGCGACTACGAAACAACGATATCTTTCTCAAGTCAGGAAGTCTTCTGCCAAAATTTCAAAGCAATACGTGTGCCCCACTTGCGATAATCGCTACGATGAGATGGAGACTCTTGAAAGGCATCTCGAAAATCAATGTGCGAATCTGCCGTCCACACCTGCCTTCAACTTAATAACCAGCGAGCTTAGCGTAGTCTTGACTAAAACAGATTACGACAAGGCGTCTCTGCTCCGAGTTAAAGAAGTCAAGAAGTTGTACCATTGCGAATTGTGCGACAAATCGCTCACGACGAGTTCGGGGCTTCGACGTCATCAGCTGCAGTGTGGTGATAAGGAACCCCAATTTGATTGCCCATGGTGCACcaaaaaatttttccgaaacgATAACCGAGACAAGCACGTTAGAAATGTGCACATATGGAAGAAAAAATCTCAACGCTTGAATAGAATTCCAACAAGTGCCAACAATGACAGTGACGACATTCCTTTCCTCGGCTGGATGAGAgaagacgacgatgacgacggcTTTTTCTCGTTGAGAAACTGTTGCCAAAGATTGCCTGAGCTCCGAATCGACAAAATCAAAGCCCTGTATCAATGCGACCTGTGCAAGAAATCGTATGCGAACGTACACAATCTTCGACGCCATCAATTGCAATGCGGAGGCAAGGAGCCTCAATTAGCCTGCACATACTGCAAAATCCGATTTTACAGGCGTGACAAGCTGCACgctcacataaaaaaaaagcatggaTATGGATGGAAAGCCAGGAAGACTTTGAATAAGCAAATGGGAACGGACCTAGACGTCGAAGATCTTGATGCCAAATTCACGCCAACAGAGTTGAAACACGCAGTTCAATATCCACAATACTTGTCGATGAACCCTCCGCAAACTACATCGAGTCAGGATCACCACTTTGTATGCGGTGAATGCGGCAAAGGCTATAAATGGTTGGACAACTTACGGAGACATCAGCGTCTTGAGTGTGGAAAACCACCTCGTTATTCGTGCAACCAATGTGACAAGATATTTTATCGACGATACAGACTTACCAAGCATACTATTGAGAAGCACGATGAGAGCTCACAGGGCATTACTCTTGCGGTCGACGAGTTATCCAGGGACTGCACGGTTCCTTTTCAGACCGATCTCGGCTACTTTCTCGAAGGTTCGACAATCGTTCAGTCTATGGACACGAATTTGAACACTCAGAAGGGCAAAAAAACGGCAAAGAGCGTTCAATTTTTCTGTAGCGGATGCGGACGAGCTTACACGAGAGTCGACAGTCTCAAAAGGCACCAGCAAAAGTGCAACGATTTTCTCACGTCTCTCGAGGACTACCGAGGATACGACGGTCAACAGTATTACTGTTCTCAGTGCGGAAAGAGTTATCGTCGTCGCGACACTTTGCAGAGGCATCAAAGACTCGTATGTGGTGACAAGGAGAAGCAATCAACTTGCAATATATGCCAGAAGAAATTCGCATACAGATTTTTGCTGAAGAAACATCTTGTTTTGCACGAGAAGGAAACGGAAAATTTCGAGACTACTTGGATCGGTTTAACCTTTTTGCCTTCAGAATCGCAGGAGCCTGTAGATCCATACGATGCGCTTCGGATGCTTGAGAGAAAGACGCGAGATCTTGGTGCTGAGCATTATcgagaaaatgtgaattttccGACGACCTACAAGACCAGAACCAGCGAACAAACGCAGCCACCCACATTCTCCATGGCTGTGCTTACCGACACGGATACATATGTTCACGTTCAGCAACAACCCGAGTACATTTGCAACAGCTGCGGAAAAAAGTACAAATGGCTGGACAGCCTCAAGAGGCATCAGAGAGTCGAGTGCGGAAACAAGGAAAAGCAATTCTCCTGCTTTGCCTGCCACCGGAAATTCAAGTACAGATACGAGCTTAGGAATCACTTGTCTGCCCATCATGGCTATTGA
- Protein Sequence
- MTSIPIFELLQPELSVVLQKIDCDIQPHIQISRVEKLYKCDRCKKSFLTLRGLRCHHLNCGKEKLRYFCRLCSLRFTKSINLAAHVKSVHKLKGKKDQRLNRNSASTNKTQTATTKQRYLSQVRKSSAKISKQYVCPTCDNRYDEMETLERHLENQCANLPSTPAFNLITSELSVVLTKTDYDKASLLRVKEVKKLYHCELCDKSLTTSSGLRRHQLQCGDKEPQFDCPWCTKKFFRNDNRDKHVRNVHIWKKKSQRLNRIPTSANNDSDDIPFLGWMREDDDDDGFFSLRNCCQRLPELRIDKIKALYQCDLCKKSYANVHNLRRHQLQCGGKEPQLACTYCKIRFYRRDKLHAHIKKKHGYGWKARKTLNKQMGTDLDVEDLDAKFTPTELKHAVQYPQYLSMNPPQTTSSQDHHFVCGECGKGYKWLDNLRRHQRLECGKPPRYSCNQCDKIFYRRYRLTKHTIEKHDESSQGITLAVDELSRDCTVPFQTDLGYFLEGSTIVQSMDTNLNTQKGKKTAKSVQFFCSGCGRAYTRVDSLKRHQQKCNDFLTSLEDYRGYDGQQYYCSQCGKSYRRRDTLQRHQRLVCGDKEKQSTCNICQKKFAYRFLLKKHLVLHEKETENFETTWIGLTFLPSESQEPVDPYDALRMLERKTRDLGAEHYRENVNFPTTYKTRTSEQTQPPTFSMAVLTDTDTYVHVQQQPEYICNSCGKKYKWLDSLKRHQRVECGNKEKQFSCFACHRKFKYRYELRNHLSAHHGY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -