Tlin028478.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453053.1:5138968-5143959[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 2.9e-05 0.0037 18.4 0.8 2 23 301 322 300 322 0.97 2 11 4.8e-05 0.0062 17.7 1.0 1 23 330 353 330 353 0.96 3 11 2.3e-05 0.0029 18.7 2.7 1 23 387 409 387 409 0.98 4 11 8.8e-07 0.00011 23.2 1.6 2 23 449 470 448 470 0.97 5 11 0.00022 0.028 15.6 2.8 1 23 475 498 475 498 0.96 6 11 1.2e-06 0.00015 22.8 0.6 1 23 536 558 536 558 0.98 7 11 8.6e-07 0.00011 23.2 0.9 1 23 568 590 568 590 0.96 8 11 3.6e-06 0.00046 21.3 1.2 1 23 596 618 596 618 0.99 9 11 1.2e-05 0.0016 19.6 0.2 1 23 624 646 624 646 0.98 10 11 0.0021 0.27 12.5 4.2 1 23 652 674 652 674 0.98 11 11 0.00046 0.059 14.6 0.3 1 21 680 700 680 701 0.94
Sequence Information
- Coding Sequence
- ATGAATGTTGCGAATGAACAAGAGACGGTCGTAAATACCGTCGTAAAAATACACGTTACCGGCGAGGAGTGTcgaatatgtttgaaaaaatgcaatcaaGTTTGGGAAATGTTCCATCACGCGACCGACGAGATACCGAGAAAATTGATGGCGTGTGCTGCTGTGCAGGTAGAAGAAGGCGACGGTTTGCCGGCGATAATTTGCCAGCCGTGTCGTAGACTCTTGGATGTATCTTACGAATTCAAGTGTCAAGCTGAGCAGTCGGACGCCAGACTGCGAGAAATACTCATATCAAAAATTCCTGTCGAAGATGAAACAAAAATGCTGAGTCTGACGCATTCCGAGAATGTTGCTATCGGCGAAGCGATAGCCGAAGAAATTGCCCAAGAACACGCAAATGTAAGCGACTGCACCGAATTGGTCAATGCTCTAACGGATCAGCACATGGTAGCGCAATTAAATCAACACCATTTCACCGCTCATCAGCATCCGATTATTTTTGAGATTCAACCTCCGTCGCAACACAATGAATCGATTATGGGAGAAGCTATTAACAATGAGAACGTCGTATGCGACGTTAGCGAAGGCACGGAACACAAAAGCTTAGAATTATCCGATGCTCAACAGAATCAAGTCGTTGACGTTCTGATAGAAAAATACGGGGATTTGGATTCAAACATAGAGACGGAAAGGTTGAAACAAGAGATATCGTTGATGGATACCGAAGAGAGCGAAGATTCTGACGGAGCGAGTCAAGAATTCGTTGCCGAAAATCCGCCCGAATCCAAGAACATCGAAGAAACGAATGTCGTCGGAGATTCTCAAGTGGAGGACGATGCAAAGGAAGGCAATTACGAGAGCGACGAGGAAAAGCCTCTGATAAGCAGAACTCAAAGACAAAAATGTCCTCACTGCATTAAGACTTTTGCAACGAAATCCGCGCTTGAAAGGCACGTTGAGATTCACGAGAACAAAACTAAATTGCGATATGTTTGTTACATGTGTGACAAACAATTTTCCACAATTTCCAAATTGAAGAGTCACGTTCTTAGCAGTCACGACAGTTTGCGGAACGAGGATAAAACGACGGTTGACGATAGCGAAGCAACGAGAATGGAAAAAGTATCTACGAGATCTGAAAGCAAAAAGGGAATGAAATATTCCTGCAAAGTTTGCGGTAAACAGTTTACGTACCAAAAGTCATTTATGACTCATGCTAAAAGTCATCCAGGCTACGAACCGGAAAGTACGAATAATGAAAAGGAAGAGAATGTCGGACCTTCTGAAGATTCGAACGAACGAGGCAATGAGTCTGAAGATGACGATATGCCACTCGAAGGACTGCAATGCACGCAGTGCGGTAAATTATTCGCTACAAAACGAAATCTCAAAAGGCATATTACCACTCACAGCGGATTGAAGTTTCATTGCTCGACTTGCGGCAAAGAATTCTCGAGAATAGACAAACTCAAAGAGCACGAACAATCGAAACACAACGAGGAATTGTTTGCCTCTTCGGATTCCGACTCTGATGATGATACggataatgaaaacaaaaatcatgatGGCAATGAAAGTAGAAAGAagGAAAAGCACAACAGACCGCATCAGTGTCCAATGTGTCCAAAGGCATTCGCGCAGGAACAATCCCTCACGAATCACATGGAGCGTCACAAACGCGTGAAGGACACGCAGAAGCGTTTTCTCTGTGAAGTTTGCAGCAAATGTTTTGCCCAGAGTGGATCTCTCGTGGCGCATATGCGCACACACACAGGAGTAAAACCTTATGTGTGCAGCGTGTGCAGCAGGGCATTTACGAAAAGCACGTATCTCCAGTTGCATCTGAGAACTCACAGCGGCGAAAAACCGTATATATGCCAATATTGCAGCCGAGCTTTCGCTCGAGCGAATACTTTAGCCCGGCACATAACGATGCACACCGGAGAAGCTAAATATCACTGTCAGATATGCATGAAATCTTTCAGACGCTTGACTTCTCTCAACGAACACACTTATACTCACACTGGTCAGCGACCATATGCTTGTAAAATATGCACGAAGCGATACAACAACGCTGGTTCGTTATATGCTCACACGAAAAAGTGCAAGGCTCAGCAATTGTCGGGCACCACAACGACGTACACGATTCCCGTCGAGGAAACCGTGCATCAAAACGGCGGTTCGGCGTCGCAGATGATGCTTTATTCTCAGAGAAAATTGGTGGAAGAGTCTACCGTTGGTCAGGTAAATCCTACTCCGCAATTTATGATCACGAATGTTCATAACCCTTCGTTGAAGCCTCTGTCGACAAACATGATACCGCAGTTCACGGTCGAGGATCCTAATTTTTGCGGGGTTAACAAAGCCTACAAAAGTTCTTACTACACGATATATCCGAATATGCATATAGACTGA
- Protein Sequence
- MNVANEQETVVNTVVKIHVTGEECRICLKKCNQVWEMFHHATDEIPRKLMACAAVQVEEGDGLPAIICQPCRRLLDVSYEFKCQAEQSDARLREILISKIPVEDETKMLSLTHSENVAIGEAIAEEIAQEHANVSDCTELVNALTDQHMVAQLNQHHFTAHQHPIIFEIQPPSQHNESIMGEAINNENVVCDVSEGTEHKSLELSDAQQNQVVDVLIEKYGDLDSNIETERLKQEISLMDTEESEDSDGASQEFVAENPPESKNIEETNVVGDSQVEDDAKEGNYESDEEKPLISRTQRQKCPHCIKTFATKSALERHVEIHENKTKLRYVCYMCDKQFSTISKLKSHVLSSHDSLRNEDKTTVDDSEATRMEKVSTRSESKKGMKYSCKVCGKQFTYQKSFMTHAKSHPGYEPESTNNEKEENVGPSEDSNERGNESEDDDMPLEGLQCTQCGKLFATKRNLKRHITTHSGLKFHCSTCGKEFSRIDKLKEHEQSKHNEELFASSDSDSDDDTDNENKNHDGNESRKKEKHNRPHQCPMCPKAFAQEQSLTNHMERHKRVKDTQKRFLCEVCSKCFAQSGSLVAHMRTHTGVKPYVCSVCSRAFTKSTYLQLHLRTHSGEKPYICQYCSRAFARANTLARHITMHTGEAKYHCQICMKSFRRLTSLNEHTYTHTGQRPYACKICTKRYNNAGSLYAHTKKCKAQQLSGTTTTYTIPVEETVHQNGGSASQMMLYSQRKLVEESTVGQVNPTPQFMITNVHNPSLKPLSTNMIPQFTVEDPNFCGVNKAYKSSYYTIYPNMHID
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00414503;
- 90% Identity
- iTF_00343343;
- 80% Identity
- -