Tlin021229.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453046.1:5010810-5013431[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.2e-05 0.0016 19.6 4.2 1 23 354 376 354 376 0.99 2 15 0.01 1.3 10.4 4.7 1 23 382 405 382 405 0.97 3 15 9.9e-06 0.0013 19.9 0.8 2 23 500 521 499 521 0.97 4 15 4.2e-06 0.00054 21.0 1.6 1 23 527 549 527 549 0.98 5 15 0.0035 0.45 11.8 0.3 1 23 555 577 555 577 0.97 6 15 3.9e-06 0.0005 21.1 1.3 1 23 592 614 592 614 0.98 7 15 7.2e-06 0.00093 20.3 1.2 3 23 622 642 620 642 0.98 8 15 1.3e-05 0.0016 19.5 1.9 1 23 648 670 648 670 0.98 9 15 0.00089 0.11 13.7 0.2 1 23 676 698 676 698 0.99 10 15 6.8e-06 0.00087 20.4 0.3 1 23 704 727 704 727 0.94 11 15 2e-05 0.0026 18.9 1.3 1 23 733 755 733 755 0.98 12 15 0.00044 0.056 14.7 4.7 1 23 761 783 761 783 0.98 13 15 7.3e-06 0.00095 20.3 0.4 1 23 789 812 789 812 0.96 14 15 5.3e-06 0.00068 20.7 0.9 1 23 818 840 818 840 0.97 15 15 3.9e-06 0.0005 21.1 4.5 1 23 846 868 846 868 0.99
Sequence Information
- Coding Sequence
- ATGGATACCACAAGGACCATGACCAATGAGTGGATTCCTCCAAACGTCTTGTTGGATCGAGAGCTGCCTGTGATGCTCAATGTACCTTTTGCTTCTGCAAAACAAGAAAATTACTCGAATGGTACAGTCATGGAGCAGGAAAGAAAAACAGGCACAGAGGAAAAAGAAAGGACAATAATTCCCAGTAGCGGGATCAATTTCCTGGAGGACAAGACTGAAGCAACAATTAACAGACTTTCAAATCATATTTCACCTATGAGAATAAATCACAGAGTTCAAATAGACATCATAGACATGCAGACAGAAGAATCCATTGACTACAAACATCTCTTAATTTACGAGGAGCAATATTCCAAGTTTGTCATTCTCAGAGCACTTAAAAGCAAGGAATCAAAAGAAGTTGCTGCGGAGCTGGTAGAAATCATGACGACAATTGGAGCACCGCGAATAATTCAGAGTGGAAATGGTCGATCTTATGCAGAGCAAGTCGTACGAGAGATTCGCATTCTCCTGAGAGATTTTTGCGTCGTTCACGGTGATGCCACAAAGAATGATGATAAACGCCGCGATTTCAAGAATTCGCTGAAATTGTGGATGGCAAAAAATCCTGGAAAACAATGGCAGGATGGTCTGAAAATTCTTCAAGTGACGGAAAATACAACGACGAATTCACGAAGCGGAAAAATCCCCAGTCAGCTGTTTTTTGGAAGGAATATTTGCGAGGATCTGAGAAGAACAATAGGCGGAAAAGGGTCGACGGGAAACGTCGGGACGGAAGACGCTTCAGTTATGACGAATCTTCAGGAACGCAGCTCCGTTACTGAAGATCAAAAGCGTAATTCCCTGCAGGCGTCCATTACTGAGGCTTGTGAGATCGCCGCTATGCAATGCGAAAATGACGCCCGAAATATGGAGTACAGAGAGAATCTCGTTGAAGTTGAAGCAAACGAGAGACCTTCGAATTATGCTAGCATAAAAAGTCAATCATCGCTCATAACTAATAACGAAGCTACTGATAATTTGGTCGAAGCAAACGCTGTTGACAGcgaaaaatccaattttcgatgtaaaatttgtcaaaaacagTACGTAAAGTTGGGCCATCTGCGAAATCACATGAAAACACATACGAGAATCGGACATTTCGAGTGCACGATTTGCTGCAAATCGTTTCGCCTCTCGAGCTTGTATGATAAACATATGCAGAGATTTCACAATGAGCAAAATATAAATGAGAGTTCAGAGATTTGTGAGCGGCTGGAAAAGATGGAGAACAACGATCTGAATAATGCGAAAGATGTTGAGAGAAATGCAACGAAAGTTCGACGAATAGAAGAGAAATCGACGGAGATTCGAGTGAAGCAAAAAAACCTGGAATCGACTTCATTGACGGAGTCTGTGAGTAATTCAGAGAAgacgatttcgaaaaaatccatTTCTGTGACCAGAAGAAAGCTTAAAAAATCTTCAGCAAAATTGAATAGAAATCCACTTCTCGAATGTACATATTGCAagcaaatattcaattttccaaGCGTTCTCCAGAGACACATGAGATCCCATACAAACGAGAGACCCTACGTTTGTCAAGTTTGCAACAAAAGTTTCAAGCAACTTGGACATTTGAGTCAGCACGCGCTTACGCATACCGACTATCGGTCTTTTAACTGCACGATTTGTGCGATCAAATTCGATTCACTCGACGAGTTGAAGGAACATTCTCAGTCGCACAAGGACGAGACACTTTGCCGTACGAAAGACACTTATCGTCTTTTCGAATGCGACAGTTGCAAGAAGGTTTTTACTACGAAAAGCGTTTTGGAACGTCACATATTTACGCACAGTCACGAGCGTCAATTTGGCTGCAAGGTTTGCGGCAAAAGATTCAAGCAAGCCGGTCACGTTAAATCTCACATGTTGGTTCACACGGGCGAAAGGAAATTTGAGTGTACCGTTTGCTCGAAACGCTTTAGTCTCTCAAATTCTCTGAAGAAGCATATGTACGTACACAACGGAGAAAAACCGTATCAATGCGACGTCTGCGGCGCGAGATTCCTCGAGAAACGCAATCTAAACGGGCACCTCATGACCCATACGAACGAACGACCATTTTCCTGCAAAATTTGCGGCAAACGTTACACCCTCGCGGACACATTACGGCGTCACATAAGCGCCGCTCACGAAGACGGCCGCACTTATCAGTGCGAAATTTGCGCTAAGATGTTCAAACAACTGGCGCATCTTTCCGTGCACAAAAAAGTTCACAACGACGAGAGGCCCTTTCAGTGTCATCTTTGCGAAAAGAATTTCAAGCACAAAAACGTACTCAAATCTCATTTAGCGATCCACGCTAATGTGAGACCTTTTGAGTGCGACGTTTGCAAAGCAACTTTCGTGAGAAAGACGAATTTACAGACCCACATAACATCGGCTCACATGAACGAACGTCCTTATGTCTGCACGATTTGCAACAAGCGCTTTAAGCAAATCAGTCATCTTAACGGGCACATTGTCGTTCATAGCAATTCCATGCCTTATCAGTGCGACTTTTGTGATCGGCGCTGTAATAGACTTGATAATTTAAAGAAACACATGAGACTGCACACGAAAAACAAGGAATAA
- Protein Sequence
- MDTTRTMTNEWIPPNVLLDRELPVMLNVPFASAKQENYSNGTVMEQERKTGTEEKERTIIPSSGINFLEDKTEATINRLSNHISPMRINHRVQIDIIDMQTEESIDYKHLLIYEEQYSKFVILRALKSKESKEVAAELVEIMTTIGAPRIIQSGNGRSYAEQVVREIRILLRDFCVVHGDATKNDDKRRDFKNSLKLWMAKNPGKQWQDGLKILQVTENTTTNSRSGKIPSQLFFGRNICEDLRRTIGGKGSTGNVGTEDASVMTNLQERSSVTEDQKRNSLQASITEACEIAAMQCENDARNMEYRENLVEVEANERPSNYASIKSQSSLITNNEATDNLVEANAVDSEKSNFRCKICQKQYVKLGHLRNHMKTHTRIGHFECTICCKSFRLSSLYDKHMQRFHNEQNINESSEICERLEKMENNDLNNAKDVERNATKVRRIEEKSTEIRVKQKNLESTSLTESVSNSEKTISKKSISVTRRKLKKSSAKLNRNPLLECTYCKQIFNFPSVLQRHMRSHTNERPYVCQVCNKSFKQLGHLSQHALTHTDYRSFNCTICAIKFDSLDELKEHSQSHKDETLCRTKDTYRLFECDSCKKVFTTKSVLERHIFTHSHERQFGCKVCGKRFKQAGHVKSHMLVHTGERKFECTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHISAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHITSAHMNERPYVCTICNKRFKQISHLNGHIVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKNKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00343336;
- 90% Identity
- -
- 80% Identity
- -