Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453042.1:7701569-7711010[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 9.6e-05 0.012 16.8 1.4 1 23 468 490 468 490 0.96

2 17 1.9e-05 0.0025 19.0 1.9 1 20 496 515 496 518 0.94

3 17 3.2e-05 0.0041 18.3 0.7 1 23 524 546 524 546 0.98

4 17 7.8e-05 0.01 17.0 4.4 1 21 552 572 552 574 0.95

5 17 2.4e-05 0.0031 18.6 4.6 1 23 580 602 580 602 0.99

6 17 2.4e-05 0.0031 18.6 5.3 1 23 608 630 608 630 0.97

7 17 9.2e-06 0.0012 20.0 7.1 1 23 636 658 636 658 0.97

8 17 9e-08 1.2e-05 26.3 2.7 1 23 664 686 664 686 0.98

9 17 6.6e-05 0.0085 17.3 6.7 1 23 692 714 692 714 0.97

10 17 5.5e-07 7e-05 23.8 2.9 1 23 720 742 720 742 0.98

11 17 8.1e-06 0.001 20.1 7.8 1 23 748 770 748 770 0.98

12 17 2.6e-05 0.0033 18.6 9.1 1 23 776 798 776 798 0.98

13 17 3.4e-05 0.0043 18.2 7.5 1 23 804 826 804 826 0.98

14 17 0.00064 0.082 14.2 8.9 1 21 832 852 832 854 0.94

15 17 1.2e-05 0.0016 19.6 0.4 1 23 860 882 860 882 0.98

16 17 0.029 3.8 8.9 4.5 1 23 892 914 892 914 0.98

17 17 4.8e-07 6.1e-05 24.0 1.3 1 23 920 942 920 942 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	9.6e-05	0.012	16.8	1.4	1	23	468	490	468	490	0.96
2	17	1.9e-05	0.0025	19.0	1.9	1	20	496	515	496	518	0.94
3	17	3.2e-05	0.0041	18.3	0.7	1	23	524	546	524	546	0.98
4	17	7.8e-05	0.01	17.0	4.4	1	21	552	572	552	574	0.95
5	17	2.4e-05	0.0031	18.6	4.6	1	23	580	602	580	602	0.99
6	17	2.4e-05	0.0031	18.6	5.3	1	23	608	630	608	630	0.97
7	17	9.2e-06	0.0012	20.0	7.1	1	23	636	658	636	658	0.97
8	17	9e-08	1.2e-05	26.3	2.7	1	23	664	686	664	686	0.98
9	17	6.6e-05	0.0085	17.3	6.7	1	23	692	714	692	714	0.97
10	17	5.5e-07	7e-05	23.8	2.9	1	23	720	742	720	742	0.98
11	17	8.1e-06	0.001	20.1	7.8	1	23	748	770	748	770	0.98
12	17	2.6e-05	0.0033	18.6	9.1	1	23	776	798	776	798	0.98
13	17	3.4e-05	0.0043	18.2	7.5	1	23	804	826	804	826	0.98
14	17	0.00064	0.082	14.2	8.9	1	21	832	852	832	854	0.94
15	17	1.2e-05	0.0016	19.6	0.4	1	23	860	882	860	882	0.98
16	17	0.029	3.8	8.9	4.5	1	23	892	914	892	914	0.98
17	17	4.8e-07	6.1e-05	24.0	1.3	1	23	920	942	920	942	0.97

Sequence Information

Coding Sequence: ATGAATAGCGAACAGCACCCTCTGCCAGCTACGACGCAGGCACAGCAAGAGGAAGTAAACAGTGGTCAGAGCTGTCGTCCTTCGTATCCGGCAAGTTTGGCAAGTTCGGCGAATGTCGGGCAATTAGGAAGTAGCCCGCATACATCAGCCGACCTGCGTGTAGGTACAGCCGTAGCGTTAGCCTCCTCGGTAGCTAAGTATTGGGTCCTCACCAATCTATTTCCCGGACCGATACCTCAGGTCTCTGTCTATCACCACCCGCACTCCTCGCAGAGGAGCGCCGGAGGTGCAGCTGGTGATATCATTGCCAAGGAGTCTGGCTCTGTGTCTATTTCGCATGAGATGGTGCTAACCTCTGGTGCTCACCACCAGACAACTTCTTCgcagcatcatcatcaccatcatcatcagaGCAACTCCGTTGCCACCGGTGGTGGCGGTAACATCACCACCAATAGTCATCACGGTTCGCTTCAGTCGAGCTCGCAGATTCCAGTCTCTTTACCTGGCCTTAATCTAGACGGGACGCACATACCTGCGAGTCACTTGCAGGCAGCGCATGCACAGATGCAGCAACAGATGCAATCGCAGCAGctgcaccagcagcagcagcaacaacagcaacaacaacagcagcagcaacaacagcaacaacaacaacagcagcagcaacaacagcagcagcaacagccgcAACAATCGCATCATCAGATGCAAAATCATCAGAATCCTCAAAACAATGGACCAAATTCGCAAAACCAGAATGCACAGCGAGACGAGAACAAAGTAAAGGACGAAAGTGGTAGTTGCACAACAGAGCGTTGCAGCGATAATCAGGTTCATTGTCAGGTCCAGTGTGATCTGCAACTCCAACAACCACAGGATCTGCAGCAAAATATGatgcagcaacagcaacagcaaatTGGCGTGAATATCGGCGGAAACTCCGGCAATGACGGTGGCAATCAAAATAATTCGTCGAAAccagagaaagaaaaagagatgcGACAACTTAATATGGCGCAATTTCAAGTACCGGATTTAAAAGCTGGGGGCCATATGATGGACGTGAGAACTGCCGACGGTTCGGTAGTTAAGATAAGCGCCGGAAATGAGCAAGATCTCGCTAAAACACTCGGCGTCGaaatggtccaaaatatgtATAAGGTCAACGTCGAGGACATAAATCAGCTGTTGGCTTATCATGAGGTATTTGGAAAACTACAGAGCGAAATCGCAGCTGGAACGGTTGGTAGCAGTACAGTGCCTACCCAAACGGTGACGACGATACAGAACGGAACGCCTATAGTTCAGCAAgttcaattgaataaattcgATATCAAAACGAGCGACGGTGAAGCAACACCCGGTCCAAGCGCCTCTCCCGTATCCGTCGGTAGTCACGCGTGCGAAGTCTGCGGAAAAATCTTCCAGTTTCGTTATCAGCTCATCGTTCATCGGAGATATCACACCGAGCGGAAACCCTTCACATGCCAGGTTTGCGGAAAAGCGTTTTCAAACGCGAATGATCTGACCCGTCACGGCAAGTGTCATCTGGGTGGCTCGATGTTCACGTGCGCCGTTTGCTTTCACGTATTCGCAAACGCTCCGTCGCTAGAGCGTCACATGAAACGTCACGCGACCGACAAGCCCTATAATTGCACCGTTTGCGGAAAGAGTTTCGCCCGCAAGGAACATCTCGATAATCATACTCGATGCCATACCGGGGAAACGCCATACAGATGTCAGTACTGCGCGAAAACCTTCACTCGCAAGGAGCACATGGTTAATCACGTGCGTAAACACACCGGCGAGACGCCACATCGCTGCGACATATGCAAAAAGAGCTTTACGCGTAAGGAACACTTTATGAATCACGTAATGTGGCACACCGGCGAGACACCGCATCATTGCCAAGTCTGCGGCAAAAAGTACACACGTAAGGAACATCTCGCCAATCACATGCGCTCCCATACCAATGACACGCCTTTCCGCTGTGAGATATGCGGTAAGTCGTTTACGAGGAAGGAGCACTTCACGAATCACATAATGTGGCATACGGGTGAGACGCCGCACCGCTGTGACTTCTGCTCGAAGACGTTCACGCGAAAGGAGCATCTACTGAACCACGTACGCCAGCACACGGGTGAAACACCCTTCCGCTGTCAATACTGTCCGAAAGCGTTTACGCGGAAGGACCACCTGGTGAACCACGTCAGGCAGCACACGGGTGAGTCACCGCACAAGTGCCAGTATTGCACCAAATCGTTCACGCGGAAGGAACATTTGACAAATCACGTGCGTCAACACACAGGCGAATCGCCACACCGATGTCACTTCTGCTCCAAGTCATTTACTCGTAAGGAGCATTTGACGAATCATGTGCGAATCCACACCGGCGAATCGCCGCATAGGTGTGAGTTTTGCCAGAGGACGTTCACTAGGAAAGAACACCTCAATAATCATCTCCGTCAACACACCGGTGATTCATCACATTGTTGCAACGTTTGTAACAAACCCTTCACGAGAAAGGAGCACCTCGTGAAtcacatgcgttgtcatacCGGCGAACGTCCCTTCGTGTGTACCGAGTGCGGCAAGAGCTTCCCGCTCAAGGGCAACCTTCTCTTCCATATGCGTTCTCACAACAAAGGAAGCAACGCCGAGAGACCGTTCAGATGCGATCTCTGTCCAAAGGACTTTATGTGCAAGGGCCACCTGGTTTCGCACAGACGCTCGCACTCGGACGAGCGACCGCACAGTTGTCCCGATTGCGGCAAGACCTTCGTCGAGAAGGGCAACATGCTCAGACACTTGCGGAAACACGCGGCTGAAGGTCCGCCCACCCAAGTAGCGACACCCTCCGCGATTCCGCAACCGGGCGTTTTGCCGATTCCCGCAGCCGCCGTACTCGTCGGTCATCCGCTGGCGCCGCCAGCTCCACCGGTCGTCCCCCAACACACCGTCGTTGTCCCGACTCCGCCGGGAGTTCTCGCATCTTACTAA
Protein Sequence: MNSEQHPLPATTQAQQEEVNSGQSCRPSYPASLASSANVGQLGSSPHTSADLRVGTAVALASSVAKYWVLTNLFPGPIPQVSVYHHPHSSQRSAGGAAGDIIAKESGSVSISHEMVLTSGAHHQTTSSQHHHHHHHQSNSVATGGGGNITTNSHHGSLQSSSQIPVSLPGLNLDGTHIPASHLQAAHAQMQQQMQSQQLHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQSHHQMQNHQNPQNNGPNSQNQNAQRDENKVKDESGSCTTERCSDNQVHCQVQCDLQLQQPQDLQQNMMQQQQQQIGVNIGGNSGNDGGNQNNSSKPEKEKEMRQLNMAQFQVPDLKAGGHMMDVRTADGSVVKISAGNEQDLAKTLGVEMVQNMYKVNVEDINQLLAYHEVFGKLQSEIAAGTVGSSTVPTQTVTTIQNGTPIVQQVQLNKFDIKTSDGEATPGPSASPVSVGSHACEVCGKIFQFRYQLIVHRRYHTERKPFTCQVCGKAFSNANDLTRHGKCHLGGSMFTCAVCFHVFANAPSLERHMKRHATDKPYNCTVCGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQVCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGETPFRCQYCPKAFTRKDHLVNHVRQHTGESPHKCQYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQRTFTRKEHLNNHLRQHTGDSSHCCNVCNKPFTRKEHLVNHMRCHTGERPFVCTECGKSFPLKGNLLFHMRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSDERPHSCPDCGKTFVEKGNMLRHLRKHAAEGPPTQVATPSAIPQPGVLPIPAAAVLVGHPLAPPAPPVVPQHTVVVPTPPGVLASY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00899003;
90% Identity: iTF_00841278;
80% Identity: -