Basic Information

Insect: Tromatobia lineatoria
Gene Symbol: -
Assembly: GCA_949699805.1
Location: OX453036.1:17115365-17120330[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 27 0.00025 0.032 15.5 2.9 1 23 84 107 84 107 0.96

2 27 2.1 2.7e+02 3.1 1.5 1 23 113 136 112 136 0.87

3 27 1.7 2.2e+02 3.4 0.0 9 23 245 259 243 259 0.89

4 27 0.0022 0.28 12.5 0.2 1 23 265 287 265 287 0.97

5 27 6.8e-05 0.0088 17.2 0.8 3 23 295 315 293 315 0.98

6 27 4.3e-08 5.6e-06 27.3 1.3 1 23 365 387 365 387 0.98

7 27 0.00026 0.033 15.4 0.6 1 23 393 415 393 415 0.96

8 27 1.8 2.3e+02 3.3 0.5 2 23 509 534 509 534 0.90

9 27 0.0042 0.55 11.6 0.2 1 23 590 613 590 613 0.98

10 27 2.3 3e+02 3.0 0.3 10 23 667 680 665 680 0.93

11 27 0.13 17 6.9 0.0 5 23 690 708 689 708 0.96

12 27 1.9 2.4e+02 3.2 0.1 3 12 724 733 723 738 0.90

13 27 0.0019 0.24 12.7 0.5 1 23 750 772 750 772 0.95

14 27 0.026 3.3 9.1 0.1 1 14 778 791 778 793 0.90

15 27 6.1e-06 0.00079 20.5 3.1 1 23 899 922 899 922 0.98

16 27 0.0014 0.18 13.1 1.0 1 23 928 951 928 951 0.97

17 27 0.019 2.5 9.5 0.2 2 23 1001 1022 1000 1022 0.96

18 27 0.00012 0.015 16.5 4.0 1 21 1028 1048 1028 1051 0.96

19 27 0.0045 0.58 11.5 4.5 3 23 1058 1079 1056 1079 0.94

20 27 0.0029 0.38 12.1 1.0 1 23 1084 1107 1084 1107 0.98

21 27 0.00039 0.05 14.8 0.1 2 23 1125 1146 1124 1146 0.96

22 27 2.3e-06 0.0003 21.8 1.3 5 23 1155 1173 1152 1173 0.97

23 27 0.00018 0.024 15.9 0.3 1 23 1179 1201 1179 1201 0.96

24 27 2.9e-06 0.00037 21.6 0.1 1 23 1207 1229 1207 1229 0.98

25 27 7.9e-05 0.01 17.0 0.4 2 23 1261 1282 1260 1282 0.97

26 27 6.7e-06 0.00086 20.4 1.3 1 23 1288 1310 1288 1310 0.98

27 27 4e-06 0.00051 21.1 0.1 1 23 1316 1338 1316 1338 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	27	0.00025	0.032	15.5	2.9	1	23	84	107	84	107	0.96
2	27	2.1	2.7e+02	3.1	1.5	1	23	113	136	112	136	0.87
3	27	1.7	2.2e+02	3.4	0.0	9	23	245	259	243	259	0.89
4	27	0.0022	0.28	12.5	0.2	1	23	265	287	265	287	0.97
5	27	6.8e-05	0.0088	17.2	0.8	3	23	295	315	293	315	0.98
6	27	4.3e-08	5.6e-06	27.3	1.3	1	23	365	387	365	387	0.98
7	27	0.00026	0.033	15.4	0.6	1	23	393	415	393	415	0.96
8	27	1.8	2.3e+02	3.3	0.5	2	23	509	534	509	534	0.90
9	27	0.0042	0.55	11.6	0.2	1	23	590	613	590	613	0.98
10	27	2.3	3e+02	3.0	0.3	10	23	667	680	665	680	0.93
11	27	0.13	17	6.9	0.0	5	23	690	708	689	708	0.96
12	27	1.9	2.4e+02	3.2	0.1	3	12	724	733	723	738	0.90
13	27	0.0019	0.24	12.7	0.5	1	23	750	772	750	772	0.95
14	27	0.026	3.3	9.1	0.1	1	14	778	791	778	793	0.90
15	27	6.1e-06	0.00079	20.5	3.1	1	23	899	922	899	922	0.98
16	27	0.0014	0.18	13.1	1.0	1	23	928	951	928	951	0.97
17	27	0.019	2.5	9.5	0.2	2	23	1001	1022	1000	1022	0.96
18	27	0.00012	0.015	16.5	4.0	1	21	1028	1048	1028	1051	0.96
19	27	0.0045	0.58	11.5	4.5	3	23	1058	1079	1056	1079	0.94
20	27	0.0029	0.38	12.1	1.0	1	23	1084	1107	1084	1107	0.98
21	27	0.00039	0.05	14.8	0.1	2	23	1125	1146	1124	1146	0.96
22	27	2.3e-06	0.0003	21.8	1.3	5	23	1155	1173	1152	1173	0.97
23	27	0.00018	0.024	15.9	0.3	1	23	1179	1201	1179	1201	0.96
24	27	2.9e-06	0.00037	21.6	0.1	1	23	1207	1229	1207	1229	0.98
25	27	7.9e-05	0.01	17.0	0.4	2	23	1261	1282	1260	1282	0.97
26	27	6.7e-06	0.00086	20.4	1.3	1	23	1288	1310	1288	1310	0.98
27	27	4e-06	0.00051	21.1	0.1	1	23	1316	1338	1316	1338	0.98

Sequence Information

Coding Sequence: ATGAAGAAGGCCTCGACGCCGCTCGACGGCATTGAAACCGCTGCGTTTTACCGAGGTCCGATGAAGAGAGTAGACGATGAGTTATGGAGATCGAAAATAGAACAGGATCACGTAGACAATGAGTTATGGAGATCGAAAATAGAACAGGATCACTTACAGGTAGTGAAAAGAAAGGCGAATTCGTGGCAGGAGGACGAGGAACTCGTCTATTTGAACGATGAATTTGACGCGCAGGAGGTGTTCGGCAATTTTTCATGTCACAAGTGCCACATCGGCTTTCCAACATGGAATTTGCTAAAATCCCATATAAAAGGCTTTCACGAGGCGATCCAGTGCTTCAAGTGCAAGATTTGCTTCAACGTTTACAACAACACGGGGATATTCATGGAGCATATGTTGGCGTTACACGGTGCGAATCCTTCTGCCATTGATGGGTGCCTAGAGACTGTGATGCTTTATCGCGTGTCACGCGGCACTTTGCAAAACGCGCAAAACAAACGAATATACCGCGTGCGAAAATCTTGGTTATCTGGTGCACTACCTCCCGGACTTTTGGACCGTTTTGAGGAAAGTAAccaatgcaattttttcaaccgGCTGCTCAGTAACGAAGAAAATCTGGACACGCACATGCAGCGACAATACGCCTATGATAAACCCTTCGAAGATATCGCCGGACCCAAACCTGGAAACCCGGCTTACGAAGCTAGTGGCAAAGCCACCAGCGGCAACAGTTATACCAGCAGCGGCAATCTCAAAACGCACACGGGTGTTCATACTGATGAGGGGCCCTATACCTGTGATATTTGCAAAAGATCTTTTGAGTGGGAAAGTTCACTGATGGAACATTTGCTTCTACACACCGACACTGAACCCTTCGGCTGCGATGTTTGTGGTAAGACTTTCGTCGAACATTCCGATTTTGTCGAACACCAGAGATCACATCGTGGTCCGCTTCTTCGACCTCCACCCTGTTCCACCGCCCCCATTCTCAACAATCACATGCTGATGCATGACTGGAATCGTTACAAAATCTTTTCTCGGAATGAACATCTGACATCCAACATGCGCATACACGAACCTACCAATTCCTTCAGATGCACAATTTGCAACAAATCATTCACTCAGAACTCCGCTCTCAGACGACATCTTCTCGTGCACACGGGAACGCAAGCTTACGCTTGCGATATTTGCGGCAAGACATATAAACAATTATCCAGATTTATGGACCATCGAGTGTCTCACGCCAGTGATTTTCCGGGGCCTCGAGTGCTCACCGGTAATATTTTgGAATTTTACGGCGATAGTCGCGAATTCATACTCAAAATACGCTCCATCAGGCTGGAGCGGACACAACGATTCGAGACCATGGCTACGAAAGAGAGAATTCAGTACACTAATATGAAGAAGGACTCTGCGACGGTCGACGCCATTGAAATCGATACGTTTTACAAAGGTCCGATCAAGAGAGGAGACAATGAGTTCCTGAGAGTGAACAGAGGAGAGGATCGCTCACAGGGCGAACAGTGCTTCAACtgcaatattttcttcaaagttTACAACAGCTCGGAGCCATTCATGCAGCATATTTCGACGGATCACGCTGCAGATGCTTTAACCATTGATGAATGCCTAGAGGCTCTGACGCTTCATCGAGTGCCACGTGGCACTTTGCTCTATGCGCAAAGCAAACGAAAATACAGCACGCGAATATCTCTGATGACTTGTGAACCACCGTCTGAAATTTCGTCCTGTTTCAAGGAAAAGTACGAGTGTAAGTTGTGCAACTGGTTGCTCATTAGTCAAGACGATCTGGATACGCACATGCAGCGACAACACGCCTATAACGAACCCCTCAAAGATATCGCTGATCCCAAACCTGGAAACGCGGTTTACGAAGCTCGTGGCAAAGTTCATACCAGCAGCGACAATCTCAGAACGCACTCACGTGTTGATACTGGCGAGGGGCCCCACTCCTCTACTGTTTCCAGAGAATACTTTGCGCGGAAAATTTCACTGACTCAACATTTGCTTCGCCACACTGGTACTATATCCTACGTCTACGATATTTGCGGCAAGGCTTATGCGGAACTTCCCCGTTTGATCCGACACCGGAGATTACATTCTGGTCCGCTTCTTCGATGTTCACCGTTTTCCAAGAACGTTGCGTGCCTGACGTGCGGCAAAACCTATTCACGAATTGGCGATCCAACATTTCACATGCGCCTATACGACACTAGCCCACCCTACGAGTGCATAATTTGCAACAAATCATTCGCTAATATAAGCCGTCTCAAGCAACATCTCTTCATTCACACGGAAATACGATCCTACGATTGCGACATTTGCGGCAAGGCCTTTATACAAAAGGAACTCCGCCACGATAATTGCCAGTTCATACCTAAAAGACGTTCCATCAGATTGCAGCAGAAGCGGCGATCTGAGGGCATCGCTCAGGAGGACGGTATTGAGTACACTAACATGAAGAAAGTCTCGGCGACGGTCGATGGCACTGAAATCGATACGTTTTACGACGTTGTGGTGAAGAGAGAAGACGATGAGTTACTGACGGTGAAAAGAGAAGAGGATGACCCTCAGGTGGTGAAACGGGAGGAGGATTCTTCGGTGACGGAAGAGGGTGAGGAACTCGTTCATTTGAACGACGACATTGACGAGGAGGAAGTGTACGGCGACTATTCGTGTCAGAAGTGCAACATCTGCTTTTCAACGTGGAATTTGCTTAAGTCCCATATGAAATCCGTTCATGAGGCGATACAGTGCTTTAAGTGCAAGATTTGCTTCAAAGTTTACAATAACTTAGAGCCATTCACGCAGCATGTTTCGACGGACCACGCCAGGGATTCTTGTACCATTGATGACTGCCTTGAGACTCTGACGCTGTATCGGGTCTCACGCGGCACTTCGCTTTACACGCATAACAAACGCAAGTACGGTACGCGAAGATCTCCGACGACTTGTGAACCACCGTCCGAACTTTTGTCTTGCAGTCAGTGCGATTACAAAACGAAGATCAAGAGCGAATTAGCTGTGCACGTTGCGAAACACGTGGGagataataaatattcttgcaatatttgcggcgaaaaattcaaataccgcCGCAATCTCACGTATCACATTAGATGTAGTCATAGCAAGGAGTCGTGCCTATGCGACgtttgtggaaaaaattttgCCAACAGTAGAACTCTCCACACTCATCGTAAATTCGAGCATTTCAGAAAAAAGTACGAGTGCAAATTGTGCAACCGGTTACTCATTAGCCAAGAGTATCTGGATACGCACATGCGGCGAAAACACGCTTATAAGGAACCGGTTAAAGATATCGCCAAGCCGAAACCTAAAAACCTGGTTTGCGAAGTTTGTGGCAAAGTTTTCATGAGGGGCGACAGACTCAAAGAGCACATGTTTGTTCATACTGGCGAGAGTCCCTACGTTTGTGATTGTGGCAAAGTTTTTACGAGGAAGGACAAATTCAAAAGGCACATGCGTGTTCATACTGGCGAGAGGCCCCACGTTTGTGCCATTTGCACGATATCCTTTGCACGAAGAGAAGCACTGAAGCAACATTTGCTTTTACACACTGGCACTAAACCCTACGTCTGCGATATTTGCGGCAAGGCTTTTGTGCAAAAACCCGGGTTAACGTTACACCGAAAATCACATTCTGGTCCGCTTCCTCCACTTTTACCGGTTTTCATCGGACCGATTGTCGACGAACACCTGCCGACAAAACGAAAGAAACGTGACGAAAACATTGTGTGCGTGGAATGcggcaaaaaatttttacgaaatagCCGTCTAAAAATTCACATGCGCATACACACTGGTGGCAAACCCTACAACTGCACAATTTGCAACAAATCATTCGTCCGGAGAACCGCTTTCAAGCAACATCTGCTCATTCACACGGGAACGCGACCTTATGTTTGCGACATTTGCGGCAAGGCCTTTAAACAACAGGCCGGACTCAGTGGCCATCGAAAGTCTCATCTTGGTCCTCTTCCGCCGCTTCCCCGAGTGCTCATCGATCACATTCTTAAGGACGTACTGACACCTCCTTTATGA
Protein Sequence: MKKASTPLDGIETAAFYRGPMKRVDDELWRSKIEQDHVDNELWRSKIEQDHLQVVKRKANSWQEDEELVYLNDEFDAQEVFGNFSCHKCHIGFPTWNLLKSHIKGFHEAIQCFKCKICFNVYNNTGIFMEHMLALHGANPSAIDGCLETVMLYRVSRGTLQNAQNKRIYRVRKSWLSGALPPGLLDRFEESNQCNFFNRLLSNEENLDTHMQRQYAYDKPFEDIAGPKPGNPAYEASGKATSGNSYTSSGNLKTHTGVHTDEGPYTCDICKRSFEWESSLMEHLLLHTDTEPFGCDVCGKTFVEHSDFVEHQRSHRGPLLRPPPCSTAPILNNHMLMHDWNRYKIFSRNEHLTSNMRIHEPTNSFRCTICNKSFTQNSALRRHLLVHTGTQAYACDICGKTYKQLSRFMDHRVSHASDFPGPRVLTGNILEFYGDSREFILKIRSIRLERTQRFETMATKERIQYTNMKKDSATVDAIEIDTFYKGPIKRGDNEFLRVNRGEDRSQGEQCFNCNIFFKVYNSSEPFMQHISTDHAADALTIDECLEALTLHRVPRGTLLYAQSKRKYSTRISLMTCEPPSEISSCFKEKYECKLCNWLLISQDDLDTHMQRQHAYNEPLKDIADPKPGNAVYEARGKVHTSSDNLRTHSRVDTGEGPHSSTVSREYFARKISLTQHLLRHTGTISYVYDICGKAYAELPRLIRHRRLHSGPLLRCSPFSKNVACLTCGKTYSRIGDPTFHMRLYDTSPPYECIICNKSFANISRLKQHLFIHTEIRSYDCDICGKAFIQKELRHDNCQFIPKRRSIRLQQKRRSEGIAQEDGIEYTNMKKVSATVDGTEIDTFYDVVVKREDDELLTVKREEDDPQVVKREEDSSVTEEGEELVHLNDDIDEEEVYGDYSCQKCNICFSTWNLLKSHMKSVHEAIQCFKCKICFKVYNNLEPFTQHVSTDHARDSCTIDDCLETLTLYRVSRGTSLYTHNKRKYGTRRSPTTCEPPSELLSCSQCDYKTKIKSELAVHVAKHVGDNKYSCNICGEKFKYRRNLTYHIRCSHSKESCLCDVCGKNFANSRTLHTHRKFEHFRKKYECKLCNRLLISQEYLDTHMRRKHAYKEPVKDIAKPKPKNLVCEVCGKVFMRGDRLKEHMFVHTGESPYVCDCGKVFTRKDKFKRHMRVHTGERPHVCAICTISFARREALKQHLLLHTGTKPYVCDICGKAFVQKPGLTLHRKSHSGPLPPLLPVFIGPIVDEHLPTKRKKRDENIVCVECGKKFLRNSRLKIHMRIHTGGKPYNCTICNKSFVRRTAFKQHLLIHTGTRPYVCDICGKAFKQQAGLSGHRKSHLGPLPPLPRVLIDHILKDVLTPPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -