Tlin006259.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- ECU06_1150
- Assembly
- GCA_949699805.1
- Location
- OX453036.1:21558132-21563156[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.00024 0.031 15.5 0.2 1 19 113 131 113 134 0.95 2 23 0.077 9.9 7.6 3.1 1 23 196 219 196 219 0.92 3 23 0.0002 0.026 15.8 1.6 1 23 252 274 252 274 0.98 4 23 1.5e-05 0.0019 19.3 1.6 1 23 280 303 280 303 0.97 5 23 3.7e-06 0.00048 21.2 0.4 1 23 309 331 309 331 0.98 6 23 2.7e-07 3.4e-05 24.8 0.6 1 23 337 359 337 359 0.99 7 23 0.00011 0.014 16.6 0.4 1 23 365 387 365 387 0.98 8 23 4.2e-05 0.0054 17.9 1.7 1 23 393 415 393 415 0.97 9 23 2.1e-05 0.0027 18.8 1.0 2 23 422 444 421 444 0.96 10 23 0.00047 0.06 14.6 1.2 1 23 466 488 466 488 0.99 11 23 0.0054 0.7 11.3 0.2 1 23 494 517 494 517 0.94 12 23 0.0041 0.53 11.6 0.6 1 23 523 545 523 545 0.96 13 23 8.4e-06 0.0011 20.1 2.5 1 23 551 573 551 573 0.94 14 23 2.4e-06 0.00031 21.8 0.3 1 23 579 601 579 601 0.98 15 23 6.7e-05 0.0087 17.3 5.3 1 23 607 629 607 629 0.96 16 23 0.15 19 6.7 0.9 1 13 635 647 635 649 0.92 17 23 2.3e-06 0.00029 21.9 1.6 1 23 794 816 794 816 0.99 18 23 0.011 1.5 10.2 6.3 1 23 822 845 822 845 0.96 19 23 0.0001 0.013 16.7 1.1 1 23 851 874 851 874 0.97 20 23 1e-06 0.00013 23.0 1.9 1 23 880 902 880 902 0.98 21 23 0.0044 0.56 11.5 1.8 1 23 908 930 908 930 0.95 22 23 6.9e-06 0.00089 20.4 3.9 1 23 936 958 936 958 0.98 23 23 7.1e-05 0.0091 17.2 2.4 1 23 964 987 964 987 0.97
Sequence Information
- Coding Sequence
- ATGACGCAGATGACAAAGAAGAATTACGACTACGCCGTGTGCGCCATACGATTCCGCGTGGAATATAAAAACGAAGGCGAAAAATATACGAGTGGCGCCACCATCGAAGACATTCAAATCTCCTGCGTTTGTTATGTTTCCAGATCTGGCGCAACGAGGCAAAGAAGGTTCGCATCTTTCCGCAGAAAACCGACAGATTCGTCCACCGGAAATGGAACCACTGAGCTCGCAAGAGTTTCCGCCCATTCCAGACGCGACAACGACGAGGATTCGAGCAAGGAACGAGAAACGAAGGccctaaacaaaaataaaagaaattccgAAGCGAACGGCAAGTTTTCCTGCGAAAAATGTTGGAGAGTTTTCATGAGAGagacaaatttgaaacgacATGCCGCAAATTGTCGCGGAAAGTATAAAATCCGAAAAACAACCTTTTCGCCCCAGGAAACATTTTtcgaagaagccaaaatagcggCCAATGAAAAAAGCGCGGATATTTACCGCATTATCGAATCGACAGCCGCCAACGAACCGAATTCTTCGGACGATCGAGAAAtcgcaaaaacgaaaaaatcacttttctatcCTTGTCTCTATTGCGACTACACGACGCaaaagaagaaattattgaatCAGCATACACACGCTTATCATTCGGACGCATTGGACACAAAACGAGAAGAAAATCAGCGAAGCATCGACAAGGATCTCGTAAAACGTGCCAAAATGGAAGCGAACGGTCGTGTGTATTACCACTGCAACGATTGCGGCAAAAACCTCTTTTCGCCTTACACGTTTACGTGGCACGTGAGAATTCACACGGGCGAACGACCATTTACTTGTCATCTGTGCGGAAAACAATTTCGCGTCAATCAGGGCCTCGCTCGTCATCTTCGCGAGACTCACGCGGGtatcaaaaaatttccttgCGATCTTTGCGGTCGTATGTTCTCGACGAAGCGAAACGTCGAGGATCACAGACGAATACACACCGGCGAACGTCCTTACGTCTGTAACGTTTGCGGCAAAGCATTCAAACAAAAAGCATCACTATTCGTGCACAATCGTACGCACACGGACGTTTTTCCGTTTAAGTGCAGCTATTGCGGACAAGGATTTCGTACGAGACCTCCACTCGTTATTCACTTGACAAAACACACTGGCGAAAAGCCGCACACTTGCGACATTTGTGAACGCGCTTTTCGCATCAAGTACGAGCTCAAACGTCATCGGCTTATACACTTTGACGAGAAACCTTGGCAATGTTCGGAATGCGATCTCTCGTTTAGACAGAAACGCTACTTGGTTAATCATAAGAGAATCAATCATAACTGCGGCTCACGGGCTAAAGAAAACGGCGTAACCTGTGAATCACATGACGGCACGACTTTCTACAAATGTCAAGATTGCGAAAAGCTTTTGTCGACAGCATATAACTTTCTCGTTCATCGGAAAAGTCACAGTTGTGAAAAGCCACACGCGTGTCGCGAATGCGGCAAGAGTTATGGCTCAGTTGCCATACTTCAGAGACACATTCGCGAGGTTCATTTGGGAATGAAAGATTTCTCATGCGATCTTTGCGATCGTAGCTTCGCCACGAAAATCACGCGTGACGAGCATCGAAGAGCTCACACTGGCGAACGACCGCATGTTTGCGATATCTGCGACAAATCCTTTACGCAAAAGTCATCGCTATATGTGCACAAACTTTTTCACACTTCGTATTTACCATATTCGTGCACCGAGTGCGATATGGCGTTCAGAAGAAAGCAGGATCTTGAAAAACACGTATTAGTTCACACGGGTGAAAGGCCACACGCTTGCGAAATGTGCCATCTACGGTTTCGTACGAGCGGTAATCTTAGTCGTCATAGAAAGACTCACACTAATTTAAATCCGTACGTTTGCGAGCACTGCGGATCGAAATTCAGCCAAAAACGGCCGAAAAAATCTTGGACTCTGAATCCGGAAAGCTCTGACTTCGCGGATTTTCAGAAAGCCTACGTTAACTTCTTTGGTACTGTTAAAATACCAAGGAGAGCAAAGATTGAACTCCCAGAGAGTTTCAATCATGTCACCGGTGCGTGTACATTGGTCGAATCTCCTGAAGAAATTTCCACGGCGGGCGCTTCtcaaaatgaagagaaaacgGATGATAGAATTATTCCAAGCCCTCGAATGACTGGCAGCAATAAAGATTCAATAAATGGCGCAATTGCTGGAAAGATTTTGCCTTCCAAAGACAAATgtaaaaacaattgttattCCAAGACCGAGTCAATGACCCGGGAAAAGTCTGcaaaagaattgaaagaaaacgAGGCAGATTCTGAGATTTCGAAGAcgatgaaaaagaaacaaatttcgGACGGTCCGTATACGTGTGATTTGtgcggaaaaaaatttcgattgcgGGATAGCCTCAAGAGCCACACGCGAATTCATACGGGAGAAAAGCAATTTACCTGCCACATATGTGGAAAGCAATTTGGACAAACTGGTTGTCTTTACTATCACCTAAAGCACGTTCATGGAGgagtaaaaaatcattcttgcGATATATGCGGCAGATCTTTCGCTATGAAGACGACGATGGAAGATCATCGGAGATCCATTCACACCGGCGAACGGCCATTCGTCTGCGATTCTTGCGGCAAAACTTTCAAGACCAAATCGTCGCTGTACATTCACAGCAGAACGCACACGGAATCGTTTCCGCATGAGTGCAAATATTGCAATAAGGTCTTTAGATGGAGACAACAGCTTTTGGGACACTTGACTATACATACgggggaaaaaaatcatacttgcGATGTGTGCGGCAAAGCTTTCGGCGTGAAAAATCATTTGACCAGGCACAAACGTACTCATTCAGTGGAAAAACCTTACAATTGTCAGCAATGCGGCATGAACTTTGGACAAAAAAGGTATCTCACGACTCATCAACGATCACGACACAAATGA
- Protein Sequence
- MTQMTKKNYDYAVCAIRFRVEYKNEGEKYTSGATIEDIQISCVCYVSRSGATRQRRFASFRRKPTDSSTGNGTTELARVSAHSRRDNDEDSSKERETKALNKNKRNSEANGKFSCEKCWRVFMRETNLKRHAANCRGKYKIRKTTFSPQETFFEEAKIAANEKSADIYRIIESTAANEPNSSDDREIAKTKKSLFYPCLYCDYTTQKKKLLNQHTHAYHSDALDTKREENQRSIDKDLVKRAKMEANGRVYYHCNDCGKNLFSPYTFTWHVRIHTGERPFTCHLCGKQFRVNQGLARHLRETHAGIKKFPCDLCGRMFSTKRNVEDHRRIHTGERPYVCNVCGKAFKQKASLFVHNRTHTDVFPFKCSYCGQGFRTRPPLVIHLTKHTGEKPHTCDICERAFRIKYELKRHRLIHFDEKPWQCSECDLSFRQKRYLVNHKRINHNCGSRAKENGVTCESHDGTTFYKCQDCEKLLSTAYNFLVHRKSHSCEKPHACRECGKSYGSVAILQRHIREVHLGMKDFSCDLCDRSFATKITRDEHRRAHTGERPHVCDICDKSFTQKSSLYVHKLFHTSYLPYSCTECDMAFRRKQDLEKHVLVHTGERPHACEMCHLRFRTSGNLSRHRKTHTNLNPYVCEHCGSKFSQKRPKKSWTLNPESSDFADFQKAYVNFFGTVKIPRRAKIELPESFNHVTGACTLVESPEEISTAGASQNEEKTDDRIIPSPRMTGSNKDSINGAIAGKILPSKDKCKNNCYSKTESMTREKSAKELKENEADSEISKTMKKKQISDGPYTCDLCGKKFRLRDSLKSHTRIHTGEKQFTCHICGKQFGQTGCLYYHLKHVHGGVKNHSCDICGRSFAMKTTMEDHRRSIHTGERPFVCDSCGKTFKTKSSLYIHSRTHTESFPHECKYCNKVFRWRQQLLGHLTIHTGEKNHTCDVCGKAFGVKNHLTRHKRTHSVEKPYNCQQCGMNFGQKRYLTTHQRSRHK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -