Tlin013275.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453040.1:12732524-12735018[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 8.4e-10 8.8e-07 29.3 0.2 6 35 23 52 18 56 0.88
Sequence Information
- Coding Sequence
- ATGCCGAAAACACCAAAAAAACGTATAGCCAAACCGAACCGAAGAGACTATAGCCAAACTTCGGTTGAGCTTGCCCTTAAAGCAGTGGCATCTGGAAAATCCATAAGAGAGGCAGCAACAAAATATGGAGTCCCATCGAGCACATTGTTTGGTAAAGCGAAAGCTATTTACCCGGTAAATGCAACAATGGGGCCAAACTCTGTTCTCACTGTGGATGAAGAACAACAACTTGTCGATTGGATATTCCACATCAGCGAAACAGGTTTCCCAGTCAACAAAGAACAGCTACTTAACAGTGTTCAACTGTTAATTACAGGGACGAAACGTGAAACACCTTTTACAAATAATCGTCCAGGTCGTCACTGGTATGAGGCATTCTGTCGGCGTCATCCGGAACTCTCTGTCCGTGTTGGCCAAAATCTTACGTATGGTCGGTCCGCGGCGACTCAGGAAACCGTAAGGAATTGGTTTCAAGAAGTGTCAGATCATTTGAAAAGGAAGGATCTCCTCAATATTGATCCTTCAAGGGTCTATAATTGTGATGAATGCGGATTTCGGTTGTACACAAAGGCAGATAATGTCATTGTACGAAAAGGCGCGAAAGCCGTTACTAAAATCGTTAACACGGATGAAAAAGAATGCCTGACAACCCTTTTTATGGTGAACGCAGCAGGTACCATGATCCCTCCGATGGTAATGTATGGGTACAAGCGAATGCCAAGTTCTGTAACTCAAAATGTTCCGTCGGATTGGAGCACTGGGACATCGGACAAAGGATGGATGACCAGCGCGACGTTCTTCGAATACATATCGAATGTCTTCTACCCTTGGTTACAGAAAAACAATGTCGAGTTCCCAATCGTTCTCTTCATCGATGGTCGTTCATCTCATTGCACTTTAATGTTGAGCAATTTCTGCAGAGAAGTTAAGATTGAGTTAATCGCTCTTTACCCTAACGCTAAACACATACTGCAGCCATTGGATTTCGGCGTTTTTCATCCGCTCAAAACAGCGTGGAAAAGAACGTTGAATCTGTGGAGACTCGAAAACAACGGGGTGCGATTAATGAAAGAAGAATTTGCACCGCTATTGAAAACTGCAGTAGATTCCCTCGACCTCGTACAAACTATCAAAAATGGATTTCAATCATGCGGATTGGTACCTTTTTCACCAGATGCTGTTGATTTTAACATTCCTCGTAAAGGAATAAAGATAAACGATGAAAGTTGTAATGATGCTGCGATTACGGGTCAAGCTGAATATGACTTTGCGGAACATTTGAAATTGATGGAACACCAATTGCCGACTCAAGTACTCAACGGTTTTAAAGAATCGGATCATTGTGGCGTCTATGTTGATTCGAAAGCCGTTACTAAGATTGTCAACACGGACGATAAAGAAAGTCTCACGACTCTTCTTAGCGTAAACGCGGCAGGTAACATGATACCCCTCATGGTGATGTATGGGTACAAGTGGATACCAAGTTCTATAATTCAAAACGTTTCGTCGGATTGGAGCACCGGGACGACGGACAAAGAACGGATAACCAAGCCCGACGTTTTTTGGACCGAATGTGACTTTGCGAAACACTTAAAATTGATGGAGCAGCAATTGCCAACCCTCGACGGTTTTAAAGAATCTGATCATTGCAGCGTTTATATTGGTGAACTTATAAATGAAGGACTTCATCAGTATTGGCTGAAAAGTAGAAAACTCGCTGGTGGTATACTGTACGACAAATGA
- Protein Sequence
- MPKTPKKRIAKPNRRDYSQTSVELALKAVASGKSIREAATKYGVPSSTLFGKAKAIYPVNATMGPNSVLTVDEEQQLVDWIFHISETGFPVNKEQLLNSVQLLITGTKRETPFTNNRPGRHWYEAFCRRHPELSVRVGQNLTYGRSAATQETVRNWFQEVSDHLKRKDLLNIDPSRVYNCDECGFRLYTKADNVIVRKGAKAVTKIVNTDEKECLTTLFMVNAAGTMIPPMVMYGYKRMPSSVTQNVPSDWSTGTSDKGWMTSATFFEYISNVFYPWLQKNNVEFPIVLFIDGRSSHCTLMLSNFCREVKIELIALYPNAKHILQPLDFGVFHPLKTAWKRTLNLWRLENNGVRLMKEEFAPLLKTAVDSLDLVQTIKNGFQSCGLVPFSPDAVDFNIPRKGIKINDESCNDAAITGQAEYDFAEHLKLMEHQLPTQVLNGFKESDHCGVYVDSKAVTKIVNTDDKESLTTLLSVNAAGNMIPLMVMYGYKWIPSSIIQNVSSDWSTGTTDKERITKPDVFWTECDFAKHLKLMEQQLPTLDGFKESDHCSVYIGELINEGLHQYWLKSRKLAGGILYDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00652617;
- 90% Identity
- -
- 80% Identity
- -