Tlin014773.1
Basic Information
- Insect
- Tromatobia lineatoria
- Gene Symbol
- -
- Assembly
- GCA_949699805.1
- Location
- OX453041.1:8559459-8560964[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 6e-11 6.3e-08 33.0 0.0 4 36 22 54 20 57 0.94 2 2 6.9 7.3e+03 -2.4 0.0 25 31 206 212 205 212 0.86
Sequence Information
- Coding Sequence
- atggccctatcagaaaaaaaaggtcCTAAAAAACCTTACGAAAGGTTTAAATATGCCCGACACAATATGGAAGAGGCTGTGAAAGCTGTTCGGGGTGGCATGAAACTCTCTACTGCAGCATCGCAATACGGTGTACCTAAATCGACATTGCACACAAAATGCACTGGTAAAGTTCCTGATCAGTGTAAGATGGGACCTAAATCGATTCTCACAGAAGCTGAAGAGGATCGCATAGCAAAGTGGATCTTGGACAGAGCCCAGGTTGGATTTGCTATGCACCCAGATGAAATAAAAGATACTGTACAaagtataattgaaaaagttCCACGAGAAAACCCATTTACGGAAAATAGGCCAGGTGAAAAATGGATGAGCCTTTTTTTGAAAAGACATCCGGAAATTCGTAAGGAACATATAGACATTACCTCCAAGACTCGTGGCAAGATCACTGAAGAACGTTTACGACAGTGGTTCACTGAAGTTAGGAGCTTTTTGAGAGAGAACAATGCTCTTGATGTTCTTGACAGACCTTGCAGCATTTTTAGTGGTGATGAAACAGGTGTACAAACCTGTCCTAATAGTGGTTTGTTGTTAGACGAAAAAAGCGAAAagaatttgtatgaaattcCAAACAGTGAAGAAAAAGAGTGCATAACGGTTCATTGTACGTTTTCTGCTTCTGGTCAGACATTACCACCGCTTATCGTATTTCCCTATCAAAGAATTCCGGTACATGTTGCACAATCAGTGCCGGACGGGTGGCGAATCGGCCGGTCAAAAAATGGTTGGATGGGTCCTACTACCTTTCATGAGTATGtagctaaaattttttatccgTGGTGTGTGGAAAACAAAGTTGAGTTTCCAGTGGTATATTTCCTTGATGGGCACAAATATCACATCAGCTCGGAACTCCAAGAATTCTGCTTGCAACATAAAATAATTCTCTACTCCTTGCCGCCCAATTGTACTTCCGTGATGCAGCCGTGCAATGTTGCGATATTTGAACCATTAAAGGCACAATGGAAAAGAGTAATCAACGAACACAAACTGCAAACGCAGAAGCCAATTATGAAGTTCCATTTTGCTCCGCTATTCAAAACAGCTTTTGACCGACTACAAATAAATGCGGAATCTATTCAGATTGGATTTGGAACCTGCGGATTATATCCCTTCGACGAAGATGCTGTTGATTATAGCAAGTGCAATTCCACGCGGAGAAGTGAACCTTACGAAGAACCGAAACACCCGTCCATCGACACCGAAGACTTTGCTTCTGCGAAGAAGGTCATTGAGCATCTTATTGGATCCGAACAAGCTAAATTATTTGCAGACATGAGAAATGCGAACGGAGATGAAGATCCTGTAGATCCTGTATTTAGGTTGTGGAAAATTTGCACCGAACACGCCGAAGGTATACATATACTGAAAGATATAGAAATTATTCCTGATACTCCATTTGAAACTCAACAAAACGATCAGTCTGATGTTGGATGTAATCCTTGA
- Protein Sequence
- MALSEKKGPKKPYERFKYARHNMEEAVKAVRGGMKLSTAASQYGVPKSTLHTKCTGKVPDQCKMGPKSILTEAEEDRIAKWILDRAQVGFAMHPDEIKDTVQSIIEKVPRENPFTENRPGEKWMSLFLKRHPEIRKEHIDITSKTRGKITEERLRQWFTEVRSFLRENNALDVLDRPCSIFSGDETGVQTCPNSGLLLDEKSEKNLYEIPNSEEKECITVHCTFSASGQTLPPLIVFPYQRIPVHVAQSVPDGWRIGRSKNGWMGPTTFHEYVAKIFYPWCVENKVEFPVVYFLDGHKYHISSELQEFCLQHKIILYSLPPNCTSVMQPCNVAIFEPLKAQWKRVINEHKLQTQKPIMKFHFAPLFKTAFDRLQINAESIQIGFGTCGLYPFDEDAVDYSKCNSTRRSEPYEEPKHPSIDTEDFASAKKVIEHLIGSEQAKLFADMRNANGDEDPVDPVFRLWKICTEHAEGIHILKDIEIIPDTPFETQQNDQSDVGCNP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -