Trha015255.2
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- stc
- Assembly
- GCA_018246435.1
- Location
- DWLU01005753.1:5186-10100[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.4 6.5e+03 -0.6 0.9 13 19 4 10 3 10 0.90 2 12 4.5 7.4e+04 -4.0 2.2 6 10 40 44 40 44 0.94 3 12 0.0031 51 6.1 7.4 1 11 50 60 50 61 0.95 4 12 0.056 9.2e+02 2.1 0.6 4 10 65 71 64 71 0.92 5 12 3.4e-06 0.056 15.6 14.0 3 19 79 95 77 95 0.92 6 12 5 8.2e+04 -7.7 8.2 7 11 131 135 123 136 0.51 7 12 0.00034 5.6 9.2 9.0 9 18 141 150 139 151 0.92 8 12 3.7 6.1e+04 -3.7 0.1 9 11 157 159 156 161 0.74 9 12 4.4e-09 7.2e-05 24.8 11.3 1 16 187 202 187 207 0.89 10 12 1.1 1.8e+04 -2.0 0.5 5 10 205 210 205 210 0.91 11 12 0.00022 3.6 9.8 11.5 1 18 217 239 217 240 0.87 12 12 0.2 3.2e+03 0.4 0.7 1 12 249 260 249 260 0.70
Sequence Information
- Coding Sequence
- ATGGGTCAAGGTGCTTGCGCAGCATGTCCCGACAAGACTTTATTGCCGTGCCGTTGCGGCCATTCCAGTCGCGAGGTGCCCTGCTCTGAATTAGCGGAAAATACCAACAATGTACTGTGCCAGAAAAAATGTAACAAGAAACTATCTTGCGGTCGCCACCGTTGCCGCACAGTGTGCTGCGCTGCCCAGTCCCACCGCTGTGCTGTGGTGTGTGGGCGTACGCTCTCCTGTCAATTGCATCGCTGCGAAGAGTTCTGTCATACTGGCCACTGTGCTCCTTGCCCACAAGTCAGCTTCGAAGAGCTGCATTGCGAGTGTGGCGCGGAGGTCCTTCTGCCACCGGTGCGCTGCGGCACTCGACCGCCATTATGTCACGAGCCGTGCCGACGCGAGCGGCCCTGCCACCACCCGCCGCACCACGCCTGCCACACCGGTGACTGCCCGCCCTGTGTTGTGCTCACCACCAAAGCGTGCCACGGACAACATGAGGAGCGAAAAACTATACCATGTTCTCAAGAAGAGTTCTCATGCGGTCTGCCGTGCGGGAAACCACTACCATGCGGAAAGCACACCTGCAATAAGACATGCCACAAAGGCCCTTGCGATACTGAAAAatGTAAGCAGGCCTGCACTGAAAAGCGTGGGGCGTGTGGCCACACGTGTGCGGCGCCTTGCCACGTGAACAACGGGGGTTCGTGCCCCAGCAGCTCGCCGTGCAGGCGGCTTGTACGCGCGACCTGCCCGTGCGGCCGGCGCACCGCCGAGCGCACCTGCCACGAAAACGCACGCGATTATGCAAAGATTATGAGCACGTTAGCGGCAACGAAAATGCAAGAGGAGGGTACTGTAGATCTGTCTGACGTACAACGACCTGGTGCAATGTTGAAGACGCTGGAGTGCGACGACGAGTGCCGCATGGAGGCGCGCTCTCGTCAGCTCGCGCTCGCGCTTCAAATCCGGAACCCAGACGTGTCCGCTAAGCTCGCGCCGAGGTACAGCGAGCACGTGCGCGCGACCGCCACTCGCGAGCCCGCCTTCGCGCAGCACGTGCACGACTGCCTCTCCGAGCTGGTGCAACGCGCCAAAAAGTCGAAGCAAAAGACCCGCGCGCACTCGTTCCCGTCTATGAACCGACAGAAACGGCAGTTCATACACGAGCTGTGTGAGCACTTCGGATGCGAAAGCGTGGCGTACGACGCCGAGCCCAACAGAAACGTGGTGGCAACAGCGGACAGGGAAAAGTCGTGGCTGCCGGCGATGAGCGTTTTGGAGGTTCTGGCGCGGGAGGCGGGTAAGAGGCGTGTACCCGGACCGGTACTACGCTCTCCCGCCACCGCCGCTAACACAGCACCTATGACCACACCCACTACATCCACCAGCAGGTCGACGGGAGGTTGGGCGACTTTGACATCCACAAACGCTTGGGCATCCCGAAGCCAGCCACGAACGAACGAGAAGCCCAAAGTGGACTATTTCGACAACCCACCAACCAACTAG
- Protein Sequence
- MGQGACAACPDKTLLPCRCGHSSREVPCSELAENTNNVLCQKKCNKKLSCGRHRCRTVCCAAQSHRCAVVCGRTLSCQLHRCEEFCHTGHCAPCPQVSFEELHCECGAEVLLPPVRCGTRPPLCHEPCRRERPCHHPPHHACHTGDCPPCVVLTTKACHGQHEERKTIPCSQEEFSCGLPCGKPLPCGKHTCNKTCHKGPCDTEKCKQACTEKRGACGHTCAAPCHVNNGGSCPSSSPCRRLVRATCPCGRRTAERTCHENARDYAKIMSTLAATKMQEEGTVDLSDVQRPGAMLKTLECDDECRMEARSRQLALALQIRNPDVSAKLAPRYSEHVRATATREPAFAQHVHDCLSELVQRAKKSKQKTRAHSFPSMNRQKRQFIHELCEHFGCESVAYDAEPNRNVVATADREKSWLPAMSVLEVLAREAGKRRVPGPVLRSPATAANTAPMTTPTTSTSRSTGGWATLTSTNAWASRSQPRTNEKPKVDYFDNPPTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -