Trha052394.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- NFXL1
- Assembly
- GCA_018246435.1
- Location
- DWLU01094640.1:1-827[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 2.3 3.8e+04 -3.0 0.5 6 10 29 33 28 33 0.73 2 8 9.2e-08 0.0015 20.6 10.8 1 18 39 56 39 57 0.97 3 8 2.9 4.8e+04 -3.4 0.5 6 10 102 106 101 107 0.49 4 8 1.2e-05 0.2 13.8 3.7 1 13 112 124 112 125 0.93 5 8 1.5e-08 0.00025 23.1 12.0 1 18 177 193 177 194 0.97 6 8 5 8.2e+04 -4.8 0.9 17 19 211 213 211 213 0.46 7 8 0.77 1.3e+04 -1.5 0.3 6 10 222 226 221 229 0.79 8 8 0.00011 1.9 10.7 8.7 1 14 232 245 232 245 0.96
Sequence Information
- Coding Sequence
- ATGGGCCCGACCCAGGATTGTTTCTGCGGGAGGAACTCGTCCACTAAGCGGTGCCAGGACACCGACTACGAGAATGGGTGGAGCTGTGGTGAGATCTGTGGGGATCTGTTGCCCTGTGGAGAGCATTTTTGCTCACGGCCGTGCCATGAGGGCCTCTGCGGTGCTTGCGATGTCAAGGTCGAGTCGCAGTGTTATTGTGGTAGTGTGCAGACAGAAATGCTGTGCAGCGCCAGGGACGAGGAGATGGACAGTGAGCTGCAACTACATGACGGGTCAGTGGAAAGCTGGACCGGCTGCTTCAGCTGTGGAGAGTCGTGCAGTCGTCCCTTTGATTGTGGAGTCCATTTCTGCCAGAAGAGCTGCCATCCACAAGACGCACATCCCGCCCATTGTCCCAGATCGCCCGACGTGGTGCTCAATTGCCCTTGTGGGAAGACGCCACTGACGGAGATTCCTGGCTATACTGCGCGCATGTCCTGCGAGGACCCGATCCCCCATTGTCTCTCGAAATGCGGGAAGACGATGCCGTGTGGACATACCTGCGAGAAGGTGTGCCACACTGGCTCTTGTGGCATCTGTATGCGTCCAACGGCAATCACCTGTCGCTGTGGTCGTAACACGATGACCACGCCGTGTCCTGACGAAAACGCGCAGCAGCCACAGTGCCCGCGCATCTGCAAAGCCGGTCTGCACTGCGGTCGACACTCGTGCAATGAGCGCTGCTGTTCTGGCGAGCAGAAGGCCCTCGAACGGCAAGCCATACGCCGCAAGCTACGATCGCACCTGCGTCCATCGGACGAAGACGTCGAGGCGGAGCACATCTGCAC
- Protein Sequence
- MGPTQDCFCGRNSSTKRCQDTDYENGWSCGEICGDLLPCGEHFCSRPCHEGLCGACDVKVESQCYCGSVQTEMLCSARDEEMDSELQLHDGSVESWTGCFSCGESCSRPFDCGVHFCQKSCHPQDAHPAHCPRSPDVVLNCPCGKTPLTEIPGYTARMSCEDPIPHCLSKCGKTMPCGHTCEKVCHTGSCGICMRPTAITCRCGRNTMTTPCPDENAQQPQCPRICKAGLHCGRHSCNERCCSGEQKALERQAIRRKLRSHLRPSDEDVEAEHIC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -