Basic Information

Insect: Troides rhadamantus
Gene Symbol: -
Assembly: GCA_018246435.1
Location: DWLU01015217.1:1-3433[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.018 4.7 10.0 0.7 1 19 47 65 47 67 0.94

2 18 9.9 2.5e+03 1.4 0.9 1 14 72 85 72 95 0.74

3 18 0.0044 1.1 11.9 0.8 1 23 101 124 101 124 0.91

4 18 0.04 10 8.9 1.9 1 23 131 154 131 154 0.93

5 18 2e-05 0.0051 19.3 0.5 1 23 161 183 161 183 0.97

6 18 0.1 26 7.6 1.4 1 23 219 241 219 241 0.98

7 18 0.0065 1.7 11.4 4.1 1 21 245 265 245 267 0.94

8 18 0.099 25 7.6 0.1 1 23 272 295 272 295 0.95

9 18 0.024 6.1 9.6 3.0 1 23 301 324 301 324 0.96

10 18 0.012 3.1 10.5 0.1 1 23 382 404 382 404 0.95

11 18 6.2 1.6e+03 2.0 0.1 2 23 428 450 427 450 0.93

12 18 0.019 4.9 9.9 5.6 1 23 472 494 472 494 0.97

13 18 3.6e-06 0.00093 21.6 2.5 2 23 499 520 499 520 0.97

14 18 0.44 1.1e+02 5.6 4.4 1 21 527 547 527 550 0.95

15 18 0.006 1.5 11.5 3.0 1 23 556 579 556 579 0.98

16 18 0.0063 1.6 11.4 3.0 1 23 585 608 585 608 0.97

17 18 4.9e-05 0.013 18.1 1.6 1 23 614 636 614 636 0.98

18 18 0.0042 1.1 12.0 2.3 1 23 642 664 642 664 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.018	4.7	10.0	0.7	1	19	47	65	47	67	0.94
2	18	9.9	2.5e+03	1.4	0.9	1	14	72	85	72	95	0.74
3	18	0.0044	1.1	11.9	0.8	1	23	101	124	101	124	0.91
4	18	0.04	10	8.9	1.9	1	23	131	154	131	154	0.93
5	18	2e-05	0.0051	19.3	0.5	1	23	161	183	161	183	0.97
6	18	0.1	26	7.6	1.4	1	23	219	241	219	241	0.98
7	18	0.0065	1.7	11.4	4.1	1	21	245	265	245	267	0.94
8	18	0.099	25	7.6	0.1	1	23	272	295	272	295	0.95
9	18	0.024	6.1	9.6	3.0	1	23	301	324	301	324	0.96
10	18	0.012	3.1	10.5	0.1	1	23	382	404	382	404	0.95
11	18	6.2	1.6e+03	2.0	0.1	2	23	428	450	427	450	0.93
12	18	0.019	4.9	9.9	5.6	1	23	472	494	472	494	0.97
13	18	3.6e-06	0.00093	21.6	2.5	2	23	499	520	499	520	0.97
14	18	0.44	1.1e+02	5.6	4.4	1	21	527	547	527	550	0.95
15	18	0.006	1.5	11.5	3.0	1	23	556	579	556	579	0.98
16	18	0.0063	1.6	11.4	3.0	1	23	585	608	585	608	0.97
17	18	4.9e-05	0.013	18.1	1.6	1	23	614	636	614	636	0.98
18	18	0.0042	1.1	12.0	2.3	1	23	642	664	642	664	0.99

Sequence Information

Coding Sequence: ATGCGGAGACGCCGGCGCGCGAACAATGAGCTGCCGGAGGAATCGGAAAAGCGGATTTCCAAAACAATGATGAGAAGGAACGCGTTGACCATACTGGAGTGTTCAACCGCGTGGGCGTTCCGCTGGTTTCACAGCGCGTTTTACTGCTCCTATTGCGACGAAAAGTTCGTTGATACCGCACCCCTGCGGGAACACTCGCACGAAATCGGAAGTTTCCCTTGCGGTGAATGCGATGAGGTGTTACACACGCGGGCTGCTCGCATGTGTCATAGGTTGAAAGTGCACAAGAAAGGTGTTAGGTACACATGCCCGCGTTGTTCAGAAGTTTTCACAACTTATTACACGAGAGCGAAACATCTGGTCGAGAGGCACGCGCAGCAGAGGAGGGACTATGAGTGCACTGCTTGCGGGAAAGCCTTCGAGACGAGTTGCAAGCGGGCAACGCACTTTCGCGCAACCCACAAACCTGTCGAGAAACGATACGAGTGTCTGTATTGCCCTTGGTACTTTGTCAGTCGGTCAAAACTGAATCGACATCTGCAGGCCCACGACGGCGAAGACCGAGCGCAATTCCATCTGTCGGAAGAACACGAGAAAAGTTTCCATATGAATCATGGCAATGGTTTGTTGCCGTTTATGCTGACTGATGGGGAATACAGATGCGTTAATTGCCACAATCAGTACGAGAGTTTCATGGGTCTTTTGGCTCACATGAACCAACATTATGCTACTTTCATCTGTTATATCTGTGGCAAGGGTTACTCAGGGAAACATAAACTGCAGTCCCACCTAAAGTGCCACGAGTCGGGGAAATTCGAGTGCCCCAAGTGCGACAGTGTGCTGCCGAGTAGGACTGCCAAGAGTAGACATCTGTCGGTTGCTCATGGACCTAGAGAACGCTATCGATGTCCGCTCTGCGAAGAACACTTCATCTCTTATCATTCTCGATTACGGCACCTAGACAAAGTTCACGGAAGAAAGTCTGAGTATAGATGCAACATGTGTACTTCTATATTTGCTAGTGgaACCGCGGATAACAATGTTAGATGGAAACCGAATCGCAAGTACAACGATCAAAGAGATAACGCAGGTGTTATTATTGAGTTTTCGAACGTTTGCCCGTTTAGATGGAAAAGAGGTGAATTCGCTTGTGCTTATTGTCCGATCACATTTGGGGATTTCACGGATGTCAGGCGGCACACAGCGAACCACCTCCACAGGGTCGAGGCACTGCGTTATGTGCGACCAGTCAATTCAATCAAAGCCGATATCTCAAATTTGCAATGCGTCCTCTGTCTTAAAAGCATGGAAGATCTAAACGGGCTTGCCGACCATTTGTTCACCGACCACAACAAACCAATCGATAAACAATTCGGTTTCGGCATAACCCCATTCTTTTTGAATAGCAAAAAGTACATTTGCTACCATTGCAAAAAGCATTACGACCTATTTACAAATCTAAACATTCACATGAATCAGCACGATAGGAATAACGTATGCTTCAAATGCGGCAAAACTTTCTCCTCCTCCCATCGGCTACAGGCTCACATGATCACCCACGAGGGTGCGGATGATATGTTTAGATGCACCAAATGCAGCGATACCTTTGCCACACGGAAGCTCATGAGCAGCCACATGAACTGCAAACACGGTACACCGTACAGATACAAGTGTCCTTACTgcaaagataaatttaaaacctaCGGCGATAGATCTAAACATCTTAAAAAAGACCACAATAGAAATGTTGAATATCCTTGTCATCTGTGCACCGCTGTGTTCGCCCAATGTAACCAAAGGACGAAACACATCCAGCGTGTTCACTTTAAATTTGAACCTTACAAATGTCAGTATTGCGATTACAAATCCTCAACGTCATCCAAGTTGCAGAATCATGCGCTGATACACTTGTCTTCGAAGCAGTTTAAGTGCGACGCTTGCGATCAAGTCTGCAACGGGTTGAAAACATACCGTCAGCACATACGTACGCACA
Protein Sequence: MRRRRRANNELPEESEKRISKTMMRRNALTILECSTAWAFRWFHSAFYCSYCDEKFVDTAPLREHSHEIGSFPCGECDEVLHTRAARMCHRLKVHKKGVRYTCPRCSEVFTTYYTRAKHLVERHAQQRRDYECTACGKAFETSCKRATHFRATHKPVEKRYECLYCPWYFVSRSKLNRHLQAHDGEDRAQFHLSEEHEKSFHMNHGNGLLPFMLTDGEYRCVNCHNQYESFMGLLAHMNQHYATFICYICGKGYSGKHKLQSHLKCHESGKFECPKCDSVLPSRTAKSRHLSVAHGPRERYRCPLCEEHFISYHSRLRHLDKVHGRKSEYRCNMCTSIFASGTADNNVRWKPNRKYNDQRDNAGVIIEFSNVCPFRWKRGEFACAYCPITFGDFTDVRRHTANHLHRVEALRYVRPVNSIKADISNLQCVLCLKSMEDLNGLADHLFTDHNKPIDKQFGFGITPFFLNSKKYICYHCKKHYDLFTNLNIHMNQHDRNNVCFKCGKTFSSSHRLQAHMITHEGADDMFRCTKCSDTFATRKLMSSHMNCKHGTPYRYKCPYCKDKFKTYGDRSKHLKKDHNRNVEYPCHLCTAVFAQCNQRTKHIQRVHFKFEPYKCQYCDYKSSTSSKLQNHALIHLSSKQFKCDACDQVCNGLKTYRQHIRTH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -