Trha021638.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01014068.1:1-5415[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 8.1e-06 0.0021 20.5 0.2 2 23 80 102 79 102 0.95 2 12 3.9 1e+03 2.6 0.2 5 23 111 129 110 129 0.92 3 12 0.0042 1.1 12.0 4.9 1 23 161 184 161 184 0.90 4 12 0.25 63 6.4 0.2 5 23 193 211 191 211 0.94 5 12 0.0023 0.58 12.8 0.3 3 23 219 239 217 239 0.96 6 12 6.1e-05 0.016 17.8 4.1 1 23 247 269 247 269 0.97 7 12 0.00011 0.028 17.0 0.7 1 23 278 301 278 301 0.97 8 12 0.00017 0.043 16.4 0.2 1 23 307 329 307 329 0.97 9 12 8.3e-07 0.00021 23.6 2.7 1 23 335 357 335 357 0.98 10 12 0.0003 0.078 15.6 0.6 1 23 362 384 362 384 0.97 11 12 3.2e-06 0.00083 21.8 3.8 1 23 390 412 390 412 0.97 12 12 0.00017 0.044 16.3 2.1 2 23 419 441 418 441 0.95
Sequence Information
- Coding Sequence
- TTCCAAAGAGATGAAGATTTAAATACTGAAAATGAGGAAGATAACGATAATTACGACAATGATGATGGGGaagattttgatgatgatgatgattacttagaTGATGTTTCAATTGCATCAttgaaaaaaatgaaaaagaaacgaTTAAAGAGAAAACCTTTAACAGAAGAAGAGGCAAATGAATTTCAAAAAGTATTGCAAAGTTCAAACTTTAAAGTTAAGGATATAGTTAAattaaaATGTGATGTTTGTGAAGAGTCTTTCAAGTCTTGGAGTGCTTTGCGTGTTCATTATGCAAGGAGTCATAAGAGCAAACCTTTAGTATTTTGCATTTGTGGGTTTATCATCAGATCAAAAAGTGTACTCTACAAACATGTATCAGATCACAAAATAGAAAGTAGAAAATTAAGGAAAGACACAGATAATGATAAACAAGAGGATACAAAATATGCAAGCCTgaatgttaaagattttataaaTTTTGTATGCAACAATTGTCAGAAGGAATGTTCAAGTTGGTATACTTTAAAAGCACACTGTCAAAGAGAGCACAAAATATTGCCCGTCGTCAATTGTGTTTGTGGTATAACACTGAAATCTAAATCGGTTCTTTATAAACATGTCCAAGATCATAAAAACCCTAATGTTTTGGCTTGCGATAAATGTCCGAGAATAACGAAAACAGTCGAAGCActgaataaacataaaatgagaCATATACCCAAGTCAGAGAGGAGGTTTTGTTGTGCGTCATGTGACAAGACTTTCAACAGCAAGGACACTCTAAAGTCGCACGAACGATCTCACATACCTATAGAAGAGAGAAAAATATTCCGATGTGATATGTGTGATTTgaagttCACAACTCGCTCGTCGGCCGCGTCACATAAACGTGTGGTTCACGACAAGATCAAGAGCTACGTGTGTGACCTATGCGGCTACGCGTGCGGCACCAACGGCGAGCTGCGTCAACACCGCGCCATACATAGCGACGACAAGCCTTTCGTCTGCAGGAAGTGTTCTAAGCCTTTCAAAACATATTCCAACTTAAAGACGCACATGGACACGCACGAGGACACGTCGTACGCATGCTATGTGTGCAACCGTGTACTCAACAGTCGCCGCACACTACGCAAGCACTTGCTTGTGCACGAGGACAAGTGCCGACACGTCTGTTCTTACTGCAACAAGGCCTTTAAACGCCGGCAAACCTTAAAGGTACACATGTATATGCACACGGGCGACAAGCCACTAACGTGCAAGTGGTGCGACGAGCGTTTCGCGTACGCGTCGACGTTGCGCTCGCACAGGTTGCGCTGTCACGCCGACAAGATGGCCGCCCTAGCGCAGTCGCACGCGCCCTCGTACGACTCAATGTCGCACACTATACATCACGAGTTTTTAAAAAGTGATTCGTCAGTGGGTCTAGCAAAAAATGAAGTGGAGGctatataa
- Protein Sequence
- FQRDEDLNTENEEDNDNYDNDDGEDFDDDDDYLDDVSIASLKKMKKKRLKRKPLTEEEANEFQKVLQSSNFKVKDIVKLKCDVCEESFKSWSALRVHYARSHKSKPLVFCICGFIIRSKSVLYKHVSDHKIESRKLRKDTDNDKQEDTKYASLNVKDFINFVCNNCQKECSSWYTLKAHCQREHKILPVVNCVCGITLKSKSVLYKHVQDHKNPNVLACDKCPRITKTVEALNKHKMRHIPKSERRFCCASCDKTFNSKDTLKSHERSHIPIEERKIFRCDMCDLKFTTRSSAASHKRVVHDKIKSYVCDLCGYACGTNGELRQHRAIHSDDKPFVCRKCSKPFKTYSNLKTHMDTHEDTSYACYVCNRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYMHTGDKPLTCKWCDERFAYASTLRSHRLRCHADKMAALAQSHAPSYDSMSHTIHHEFLKSDSSVGLAKNEVEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01402880;
- 90% Identity
- -
- 80% Identity
- -