Trha018758.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01009857.1:1-7597[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.12 31 7.4 0.3 1 23 23 45 23 45 0.96 2 11 6.3e-05 0.016 17.7 2.1 1 23 57 79 57 79 0.98 3 11 6.9e-05 0.018 17.6 3.3 1 23 85 107 85 107 0.99 4 11 1.5e-06 0.00037 22.9 3.3 1 23 114 136 114 136 0.99 5 11 2.1e-05 0.0053 19.2 0.3 1 23 142 164 142 164 0.93 6 11 2.8e-06 0.00071 22.0 0.0 1 23 170 192 170 192 0.98 7 11 3.5e-06 0.0009 21.7 2.0 1 23 198 221 198 221 0.96 8 11 0.00011 0.029 16.9 1.8 1 23 227 250 227 250 0.95 9 11 6.4e-05 0.017 17.7 0.8 2 23 257 278 256 278 0.97 10 11 5.1e-07 0.00013 24.3 0.3 1 23 284 306 284 306 0.97 11 11 0.0011 0.28 13.8 0.6 1 23 312 336 312 336 0.94
Sequence Information
- Coding Sequence
- GACGCGCTGTTTGCGGACGCAGCTGGTGCGGCTCAGCACGCCCGGTCTGCGCACGACGCGCGCCTGCACTACTGCGCGCTGTGCGGCGAGCTGATGCGCAGGAAGGCGGACTACATCGCGCACCTGGATAAACACACTAACAAAGCGCAGACCGACAAAAGCAAAACCCACGAGTGCACAATATGCAGTAAGAAATACAACTCGCGGCAGCTGCTCTCGGAGCACATGAACGTGCACAGCGGCGAGCGGCCATATCGCTGCGGCGTCTGCGGGAAGACCTTTGCCTCCAAGTACACGCATCAGTCCCACCTTAAGACGCACCTGGACAGGCCGCGACCGTTCAAGTGCACGCAGTGCGGCAAGTCGTTCCTCACCCAGCAAAATCTCACACAGCATCAAAAGACGCACTCCGGCGTCAAGGAGTTCATCTGTAAAGTGTGCAACAAGGCGTTCGGCACCCAGCACAATCTGGAGGTGCACGGCGTGGTGCACTCGGGCAGCCGCCCGTTCGTATGCGGCGTGTGCGGAAAGGCTTTCGCACGTCGCGCAGAGGTGCGCGATCACTTGAGAATACACACCGGTGAGCGGCCGTTCTCGTGCGAGATCTGCGGCGCGAGGTTCACCCAGCGCTCGAACCTGCACTCGCACAAGCGTGCGACGCATCTGGACGACAAGCGTTACAAGTGCCAGCTCTGCCCCAAACGCTTTAAGCGACGCAGGCTGCTGGATTACCACGTGAAGGCGTCGCATACCGGCGAGCGGCCACTGCAGTGCGACGTGTGCCGCGCTACCTTCGTGTACCCTGAGCACTACAAGAAACACGTGCGCATACACAGCGGCGAGAAGCCTTATGTTTGCGAAGTATGCGGGCGGCCGTTCAACACGCGCGACAACCTAAACACGCACCGCTACGTGCACAGCGACAAGAAGCCGTACGAGTGCATGGTGTGCGGCGCGGGCTACATGCGCAAGCAGCTGCTTTACCACCACATGAACACCACCGGTCACTTGGCTGAATCAATAATTGTGAACCAGCCAAGAATAACGAAGGTACCAGATGTTGTGACGTCATCGGCCTCTCTGGTCCTGGATCCGATCGACGGGAACTCCACCAACCTCTCTGACTCCcgctcttcaaaccagaacacggctatgattgcacagtactgtttgtcggctgcaatagacgctgaaGCAGCAACAGAGGCCTGA
- Protein Sequence
- DALFADAAGAAQHARSAHDARLHYCALCGELMRRKADYIAHLDKHTNKAQTDKSKTHECTICSKKYNSRQLLSEHMNVHSGERPYRCGVCGKTFASKYTHQSHLKTHLDRPRPFKCTQCGKSFLTQQNLTQHQKTHSGVKEFICKVCNKAFGTQHNLEVHGVVHSGSRPFVCGVCGKAFARRAEVRDHLRIHTGERPFSCEICGARFTQRSNLHSHKRATHLDDKRYKCQLCPKRFKRRRLLDYHVKASHTGERPLQCDVCRATFVYPEHYKKHVRIHSGEKPYVCEVCGRPFNTRDNLNTHRYVHSDKKPYECMVCGAGYMRKQLLYHHMNTTGHLAESIIVNQPRITKVPDVVTSSASLVLDPIDGNSTNLSDSRSSNQNTAMIAQYCLSAAIDAEAATEA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495935;
- 90% Identity
- iTF_01495935;
- 80% Identity
- -