Trha014770.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01005287.1:1-10631[-]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.3 1.1e+04 -1.3 0.1 18 28 29 39 22 46 0.78 2 14 0.0075 61 5.9 1.5 16 30 68 83 58 92 0.74 3 14 0.0021 17 7.6 2.4 6 38 87 119 86 120 0.73 4 14 0.0078 64 5.8 2.8 5 33 114 138 112 150 0.81 5 14 0.0004 3.3 9.9 5.1 18 38 154 175 140 179 0.89 6 14 0.0064 53 6.1 3.2 6 33 171 198 170 203 0.76 7 14 0.012 98 5.2 2.3 15 33 207 226 195 232 0.72 8 14 0.033 2.7e+02 3.8 3.4 5 38 226 259 222 260 0.78 9 14 0.0003 2.4 10.3 0.6 5 38 254 287 252 293 0.85 10 14 0.017 1.4e+02 4.7 5.2 9 38 286 315 281 322 0.80 11 14 0.0081 66 5.7 2.6 18 35 322 340 316 349 0.82 12 14 0.0002 1.6 10.9 3.6 15 38 347 371 338 375 0.82 13 14 0.0014 11 8.2 0.8 18 38 378 399 372 399 0.90 14 14 5.9 4.8e+04 -3.4 0.5 18 26 439 447 438 455 0.79
Sequence Information
- Coding Sequence
- ATGTCCGCTGGCAACCACAGCTCTGAACTCTATTTCTTACAAAAAACTGCCTAcagACGATACCATGGTGAGAGTAAGCCATACACTTGTCAAGTTTGCGGCACTGCGTTTGCAAACGCTGTGGAGCTGTCTAGACATGGAAAATGTCATTTAGCTGGAGACCCTGCGGAGAGACAGACCAAAAGATTAACCCAAGACAAACCTTATGCATGTACCACTTGCCATAAAACATTCTCTCGTAAAGAGCATTTGGACAACCATGTCCGGAGTCACACAGGAGAAACACCATACagGTGTCAGTTCTGTGCGAAAACGTTCACTCGCAAAGAGCATATGGTGAACCATGTCCGAAAGCACACAGGTGAAACCCCGCACCGATGCGACATCTGCAAGAAAAGCTTCACAAGAAAAGAACATTTTATGAACCATGTCATGTGGCACACAGGTGAAACGCCGCACCATTGTCAAATTTGTGGCAAGAAGTATACTAGGAAGGAGCATTTAGTGAACCATATGAGATCTCATACAAACGATACACCATTCCGATGCGAATTGTGCGGCAAGTCGTTCACAAGAAAGGAACACTACACCAATCACATACTGTGGCATACGGGAGAGACGCCGCATCGTTGTGACTTCTGTTCGAAGACATTTACGCGCAAAGAGCACCTGCTGAACCACGTGCGGCAGCACACCGGGGAATCGCCACACCGTTGTAGCTTTTGCTCCAAGTCTTTCACTAGGCGGGAGCACCTCGTCAACCACGTGCGTCAGCACACCGGGGAAACGCCTTTCCAATGCGGCTACTGTCCTAAAGCCTTCACTCGGAAAGACCACTTAGttaACCACGTCCGTCAGCACACAGGCGAATCGCCCCACAAATGTTCGTTTTGTACTAAATCGTTCACGCGTAAGGAGCATCTGACAAACCACGTACGCCAACACACGGGCGAGTCGCCGCACCGCTGCACCTACTGCGCCAAGTCGTTCACCAGGAAGGAGCATCTCACTAACCATATCAGAATACATACCGGCGAGTCTCCACACCGCTGTGAGTTCTGCGAGAAGACATTCACGAGGAAGGAGCATCTTATCAACCATTTAAAACAACACACGGGAGACACCCCACATGCATGCAAAATTTGCTCCAAACCATTTACAAGGAAGGAGCACCTTATAACGCACATGAGAGCTCACAATTGCGGCGAACGCCCGTTCAGCTGTGGGGAGTGCGGCAAGTCGTTCCCATTGAAAGGAAACTTGCTGTTTCATGAAAGGTCGCATCAAAAAAGCGGTGGCGGAAACAGACCGTTTAGATGTGAAGTTTGCTCTAAGGATTTCATTTGTAAAGggCATTTGGTTTCACATCAACGTATTCATGCGACTACGGGCGAGGCCGTCGCCAATAGTGAGCAGCAGGTGACTGAAGGAGAGCAATGCGGCGACAAGGACACTGCCGACCGCCCCGAACGGAAGCACGACATCAGggCTACTACTGATAATAGACCACCAGAAGAAGATGTAACCCAAAACCAGCAAAGCAACCCTGTTATGCAAATGAACAATCAG
- Protein Sequence
- MSAGNHSSELYFLQKTAYRRYHGESKPYTCQVCGTAFANAVELSRHGKCHLAGDPAERQTKRLTQDKPYACTTCHKTFSRKEHLDNHVRSHTGETPYRCQFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCQICGKKYTRKEHLVNHMRSHTNDTPFRCELCGKSFTRKEHYTNHILWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCSFCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTYCAKSFTRKEHLTNHIRIHTGESPHRCEFCEKTFTRKEHLINHLKQHTGDTPHACKICSKPFTRKEHLITHMRAHNCGERPFSCGECGKSFPLKGNLLFHERSHQKSGGGNRPFRCEVCSKDFICKGHLVSHQRIHATTGEAVANSEQQVTEGEQCGDKDTADRPERKHDIRATTDNRPPEEDVTQNQQSNPVMQMNNQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496737;
- 90% Identity
- iTF_01496737;
- 80% Identity
- iTF_01496737;