Trha059206.1
Basic Information
- Insect
- Troides rhadamantus
- Gene Symbol
- -
- Assembly
- GCA_018246435.1
- Location
- DWLU01116482.1:11-346[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.7e-08 9.1e-05 24.2 0.1 5 39 1 34 1 40 0.88 2 2 2 1.1e+04 -1.6 0.0 28 34 70 76 64 85 0.53
Sequence Information
- Coding Sequence
- ATGTCAAAAGCCCTGGATGTCGTTATGCGTGGGGTACCTGTGTACGCGGCTGCTAAGAAGTACAAAATACCCCGCTCTACACTTCGGAGCAAGGTCAAAGGGATCAGCCCAATATCAAGAAAAATGGGAGCCCATACGGCTTTTACGGCCGATGAGGAACTGAAAATTGAGGAATGGGTCCTTGAATTAGCGAGAAAAGAATTTCCCGTTTCGAAAGGAACCTTTTTAGTAAGCATGCAAAGATTAGCCGCTCAATTAGGGAAGGACATTTTCAAGGGGATAAAGATTCCATCCCTGTTACCGACCATTCCCTGTACGAGCTATGGAAGAAGGTGA
- Protein Sequence
- MSKALDVVMRGVPVYAAAKKYKIPRSTLRSKVKGISPISRKMGAHTAFTADEELKIEEWVLELARKEFPVSKGTFLVSMQRLAAQLGKDIFKGIKIPSLLPTIPCTSYGRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -