Tobl023474.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000456.1:484466-486059[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0074 0.65 11.1 1.1 3 23 60 80 59 81 0.95 2 12 0.72 63 4.8 0.1 2 23 106 128 105 128 0.90 3 12 0.00047 0.041 14.9 0.8 1 23 150 172 150 172 0.97 4 12 0.00083 0.072 14.1 2.2 1 21 176 196 176 197 0.96 5 12 0.093 8.1 7.6 1.0 2 23 239 261 238 261 0.95 6 12 0.16 14 6.9 0.2 2 23 287 309 286 309 0.95 7 12 0.00096 0.085 13.9 1.2 2 23 333 354 332 354 0.97 8 12 0.00047 0.041 14.9 0.0 1 23 358 381 358 381 0.96 9 12 0.022 1.9 9.6 0.4 1 23 385 408 385 408 0.97 10 12 8.3 7.3e+02 1.5 0.2 1 23 413 438 413 438 0.79 11 12 0.00014 0.012 16.5 3.3 1 23 447 470 447 470 0.97 12 12 0.03 2.6 9.2 1.0 1 23 480 503 480 503 0.95
Sequence Information
- Coding Sequence
- ATGGATCTTCACCTGTCTTTGGTTGCAGGAGCAACGTTGGAAATTCACGGTCGTGATAATGTTGAGACAAAATCAAAAGTAGTCCTCGTTTACCAATCACCTCAGCGGCGGAATGTAGAACTGATACTAAAGCATTCAACCGCTTATCCATTCAAGACGCGCTTCAGCCAGATACTGTGCGCTTACTGCCACATAGAATTCGAGTATCTGCCGGAACTCAAATACCACATGGAATCCCACCACGTCAATGCCGATTTCAAGAACGTATTTTACAGAATGAACGGGAATCTCATCAAAGTTGACATCAGTAATCTCGAATGTAAGGTGTGTCGTCAAAGAATCCCTGATGTGGACTCTCTGATGCAGCACTTCTCGCAGGAGCACGATCTACCTGTCAAGTTGAACGCCTGCTACGGAGTCCTGCCTTACAAACTCGTCGATAACAAATACATATGCGTCTCCTGCGATAAAACTTTTAGCGCCTTCATCGATTTCAAACGCCACATCACCACTCACTTCATGAAATACAATTGCGACAAATGCGAAACAACTTTCATCACACATCAAGCGCTGAAGGATCATCAGCGGCACGTGAAATGCTATAGAACTGCTTACAAACCTCGTAACGGTAAAGTCTTGAGATCGAGGAGCAACGCCGAAATCATACTGCAGTATTCGTCAGCTTACCCCTTCAGGACGTGGATGAGCAACTTGAACTGCACGTTTTGCAGAATGAAGACCAGGGATCCTGTGGTCTTCCGCAAGCATATGGAGTCACAACACGAGAGCTACGACGTCCAATTGGCGTTTTATAAGAAGCTGGGGAAGGCATTCTTGAATGTCGACATAACCGACCTCCGGTGCAAACTCTGCTTGATCACCATCGATAATTTCGATGATCTGATTAATCATCTAAAGAACGAGCACAATCAACCGATCAGGTCAGATGCTCAGTTTGGATTGTTGCCTTTCAAATTAAACGATGGCAGCTCGTGGCAATGTGCGATATGCACCAACCAGTTCAAGAATTTCGCTTCGCTTAAGAAGCATACGAACAGTCATTTCCAGAATTACGTCTGCGATACATGCGGTGAGGGTTTCATCACCGAATCAGCGATGATAGCTCACAACAAGGTGCCGCACGAGAACAAATATAATTGCAGCAGATGCGTAGCCACTTTCTCGACTCTAGAAGAGAGGAACGCTCATGTGAAAAGCCAGCATACCTCGTCACCGTACGTCTGCATGTACTGCAAGGACAGGCCCCGTTTCGCGACCTGGGAGGTGAGGAAGAGGCACCTTCTGGAAGTCCACAACTACGGTACCGGAGACGACACGTACAAGTGTACGATATGCCAGAAGTTTTTCAAGTCCCGATCGGGGAAGTACAACCACATGTCTCGCATCCACCGCGTCATCAAGAATTCCGAATTGAATTTCACATGCGTCAGTTGTTCACGAGCGTTCACCAGCCAACTGTTTCTTGATAAACACGTCGCGAAGAAGCATGGTAATCTATAA
- Protein Sequence
- MDLHLSLVAGATLEIHGRDNVETKSKVVLVYQSPQRRNVELILKHSTAYPFKTRFSQILCAYCHIEFEYLPELKYHMESHHVNADFKNVFYRMNGNLIKVDISNLECKVCRQRIPDVDSLMQHFSQEHDLPVKLNACYGVLPYKLVDNKYICVSCDKTFSAFIDFKRHITTHFMKYNCDKCETTFITHQALKDHQRHVKCYRTAYKPRNGKVLRSRSNAEIILQYSSAYPFRTWMSNLNCTFCRMKTRDPVVFRKHMESQHESYDVQLAFYKKLGKAFLNVDITDLRCKLCLITIDNFDDLINHLKNEHNQPIRSDAQFGLLPFKLNDGSSWQCAICTNQFKNFASLKKHTNSHFQNYVCDTCGEGFITESAMIAHNKVPHENKYNCSRCVATFSTLEERNAHVKSQHTSSPYVCMYCKDRPRFATWEVRKRHLLEVHNYGTGDDTYKCTICQKFFKSRSGKYNHMSRIHRVIKNSELNFTCVSCSRAFTSQLFLDKHVAKKHGNL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249979;
- 90% Identity
- iTF_01494598;
- 80% Identity
- -