Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: B0310.2
Assembly: GCA_029032895.1
Location: JARDWC010000185.1:807521-822042[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.013 1.1 10.3 0.4 1 23 370 392 370 392 0.97

2 10 0.023 2.1 9.5 0.8 1 23 399 422 399 422 0.93

3 10 0.35 30 5.8 0.2 1 23 426 448 426 448 0.92

4 10 0.0036 0.32 12.1 2.9 1 23 453 476 453 476 0.98

5 10 0.00045 0.039 14.9 0.7 1 23 480 503 480 503 0.97

6 10 0.19 17 6.6 0.2 3 23 589 610 588 610 0.96

7 10 0.01 0.91 10.6 0.1 3 20 627 644 626 647 0.93

8 10 7.9e-06 0.00069 20.4 2.3 1 23 653 675 653 675 0.98

9 10 0.00021 0.019 15.9 2.8 1 23 682 704 682 704 0.98

10 10 6.2e-05 0.0055 17.6 2.4 1 23 710 733 710 733 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.013	1.1	10.3	0.4	1	23	370	392	370	392	0.97
2	10	0.023	2.1	9.5	0.8	1	23	399	422	399	422	0.93
3	10	0.35	30	5.8	0.2	1	23	426	448	426	448	0.92
4	10	0.0036	0.32	12.1	2.9	1	23	453	476	453	476	0.98
5	10	0.00045	0.039	14.9	0.7	1	23	480	503	480	503	0.97
6	10	0.19	17	6.6	0.2	3	23	589	610	588	610	0.96
7	10	0.01	0.91	10.6	0.1	3	20	627	644	626	647	0.93
8	10	7.9e-06	0.00069	20.4	2.3	1	23	653	675	653	675	0.98
9	10	0.00021	0.019	15.9	2.8	1	23	682	704	682	704	0.98
10	10	6.2e-05	0.0055	17.6	2.4	1	23	710	733	710	733	0.95

Sequence Information

Coding Sequence: ATGAGGTGTAGTGTACAAAATTGTAGTAATGATACAAAGCGGACAACCAAAAGTCATGGAATTACTTTCCATATGTTTCCAAAGGAATCAAACCTTCGTACAGCGTGGACAGAAGCACTGGGCCTGATGGACTGGGAGCCAAAAGATCGCAGTACAGTCTGCTCTGAACACTTTCGCAATGAAGATTTCTATGAAACCAAATGTggattaagaaaaataaaaaatggagCAGTTCCTATGACAATGCAGGATTCTAATGAAGATCTAGATGCTCCCGCTGCCTTAAGGGTGTGCAGGATCTGCCTGGCAATAGATACCAAATTGTACCACTTAAAGGAGTACAAACTGAACAAGTTGTATGAACAGATCACGGGTCTAATGTTGTGTGAAGAAGACAAATTGCCGCAGAAGCTATGCTGGGAGTGTGCTCACAGGCTTGTATTGTGCCATAGATTTAGGAGCCGAGCGATCACCAGTCAAGATCTGATGAGGTCCACCTTAAATAGTGATAGATATATGACAATACGGGACGTCAAGTCCATATGCCGAGTCACCAACGACCTGAAGTCGTCACTAATCCAGAAGTACTATGAGCCGAACGACTGCGACCTGCAAATACGCGACGACGAAGTTCTCAAGACGGAGGCCAATGAGCTCAGCTGCGTCGGTGACGTCACAGGCGCGGCCGAGCCGCCGTGCCAGGTGGACGCGATCAAGGAGGAGCTGGAGTCGCTGGCACCCATAATGGAGGTCGAGGTGAAGGACGAGGCCAACGAGATATTCTTCCACGAGTACGACAACTTCGACAGTGACGACGAGAAGAAACTGAGCGAGGTGTACCCGAAGCCGAAGAGCAAGGTCAGGAAGAGGAAGCCGAAGGAGGAGAAGGTGGAGAAAAAGGTCAAAGTCGGGAAGACCTTGAAGAAGCGAGAGGGAGACGACAGCCCATCGACAACTATGGATAAATATAAAGTTTCAGATGTCAAAAGGAGAAAACCCAATGACGGCCTGGACGAGTCGCTGTTCACCATATCCACGTTGACCTACGACGAGCAGATCGAGGAGATCAACAGGAGGCAGGAGACCACCATGTACAAGAACGCGCCTTTCAAGTGCACCGTCTGCTTCCGAGGGTTCGCCATCAAGGATCGGTACGAGGCGCACATTGTCAGGCACAGCGAGCAAAGCGGCGCATACGAGTGTTTCATCTGCAAGACCAGGTTGAAGACTGGTAGGGCGCTGAGGAAGCACCTCACGGCGCAACACACGGAGAAGTTCAGCTGCAAAGGATGCCCATTCGTCACCAGGAACAGAGGCGTAGCGAGAGAGCACGAGAAATGGCACGCCGGCACCAAGTACCAATGTCCCCACTGCCCGTGCGAGTTTGACAAACTGACGACGTACATGGGCCACATAAGGATCAAGCACGTGTCCGACTTCGTGTGCGAGCTGTGCGGTTACACGTTCGTCAGCAAGAAGGGGATAGAAGTtcacaagaagaagaagcacCGCCTTCACGACAAGACGATCACTCTTGAGGGTCCGTACTGCGAGGTGTGCGAGGTGCAGTTCGTGTCGGAGGAGGCTCACGGGAGGCACCTCAAGCTCTCCTCCAGGCACAGCAGCGACAACGACCCGAACCGCATCAGGAACGACTCGCAGAGCATGAACTCTGAGCGAGCTGGACGGACGGTGCGGCGCATCGAGCGGCGGCCCACCGTGCATGCGCGTGTGCCGTCCGCACGTGAGCCGGGGCCCGTAGCGTGCGAGCAGTGCGGCATACAGCTGCGCGACCTCCGGCTGTACGCGCAGCACTTCCGGCGCGCCCACCCGGACAAGAACCGCACCAAGTATCCGGCTATGAAGACGCCGGCGATGTGCGAGCAGTGCGGCAGGATATTCCAGAGCATGGCGCTGCTGAAGGACCACATGTGGGTGCACACCGGCGAGAAGCGCTTCAAGTGCTCCAGCTGCGACAAGAGCTTCACGCAGAAGAGCAACCTCGTGTTCCACCTGCGCGTGCACAGCGCGCAGCGGCCGAGCTACGAGTGCCCGCTGTGCGGGAAGCACTTCGCGTTCTTCAACAACCGCCGGCGGCACATGTTTATACACACCGGTCTGAAGCCGTACCGCTGCGAGACGTGCGGCAAGTGCTTCACGACGGCGGGCGAGCAGCGCGCGCACGTGCAGCACGTGCACCTCAAGAAGCCGTggccgcggcgggcgcgcgcgcgTCGCGACTGGCACAAACAGCCGTAG
Protein Sequence: MRCSVQNCSNDTKRTTKSHGITFHMFPKESNLRTAWTEALGLMDWEPKDRSTVCSEHFRNEDFYETKCGLRKIKNGAVPMTMQDSNEDLDAPAALRVCRICLAIDTKLYHLKEYKLNKLYEQITGLMLCEEDKLPQKLCWECAHRLVLCHRFRSRAITSQDLMRSTLNSDRYMTIRDVKSICRVTNDLKSSLIQKYYEPNDCDLQIRDDEVLKTEANELSCVGDVTGAAEPPCQVDAIKEELESLAPIMEVEVKDEANEIFFHEYDNFDSDDEKKLSEVYPKPKSKVRKRKPKEEKVEKKVKVGKTLKKREGDDSPSTTMDKYKVSDVKRRKPNDGLDESLFTISTLTYDEQIEEINRRQETTMYKNAPFKCTVCFRGFAIKDRYEAHIVRHSEQSGAYECFICKTRLKTGRALRKHLTAQHTEKFSCKGCPFVTRNRGVAREHEKWHAGTKYQCPHCPCEFDKLTTYMGHIRIKHVSDFVCELCGYTFVSKKGIEVHKKKKHRLHDKTITLEGPYCEVCEVQFVSEEAHGRHLKLSSRHSSDNDPNRIRNDSQSMNSERAGRTVRRIERRPTVHARVPSAREPGPVACEQCGIQLRDLRLYAQHFRRAHPDKNRTKYPAMKTPAMCEQCGRIFQSMALLKDHMWVHTGEKRFKCSSCDKSFTQKSNLVFHLRVHSAQRPSYECPLCGKHFAFFNNRRRHMFIHTGLKPYRCETCGKCFTTAGEQRAHVQHVHLKKPWPRRARARRDWHKQP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00958011;
90% Identity: iTF_01494372;
80% Identity: iTF_01495833;