Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000162.1:146119-147378[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00046 0.04 14.9 2.4 1 23 65 88 65 88 0.95

2 10 0.00035 0.031 15.3 2.3 3 23 97 118 95 118 0.94

3 10 0.089 7.8 7.7 5.6 2 23 126 148 125 148 0.95

4 10 6.2e-06 0.00054 20.8 0.8 2 23 156 178 155 178 0.93

5 10 0.00085 0.075 14.0 7.3 1 23 185 208 185 208 0.93

6 10 0.0018 0.16 13.0 6.7 1 23 214 237 214 237 0.95

7 10 0.0001 0.0091 16.9 0.5 2 23 245 266 244 266 0.97

8 10 0.028 2.4 9.3 2.8 2 23 274 296 273 296 0.96

9 10 2.7e-05 0.0023 18.8 2.8 2 23 303 325 302 325 0.94

10 10 0.0012 0.11 13.6 5.6 1 23 335 357 335 357 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00046	0.04	14.9	2.4	1	23	65	88	65	88	0.95
2	10	0.00035	0.031	15.3	2.3	3	23	97	118	95	118	0.94
3	10	0.089	7.8	7.7	5.6	2	23	126	148	125	148	0.95
4	10	6.2e-06	0.00054	20.8	0.8	2	23	156	178	155	178	0.93
5	10	0.00085	0.075	14.0	7.3	1	23	185	208	185	208	0.93
6	10	0.0018	0.16	13.0	6.7	1	23	214	237	214	237	0.95
7	10	0.0001	0.0091	16.9	0.5	2	23	245	266	244	266	0.97
8	10	0.028	2.4	9.3	2.8	2	23	274	296	273	296	0.96
9	10	2.7e-05	0.0023	18.8	2.8	2	23	303	325	302	325	0.94
10	10	0.0012	0.11	13.6	5.6	1	23	335	357	335	357	0.97

Sequence Information

Coding Sequence: ATGGAAGAACCAATAAGAATACCGAAAGAAGAGACGGAGAAAACAGAAGTGCCAGCAAACTCTCCCACCCCATCACAGCCCCTTAAATTCATCAGTGTGACCAGTTCCATCCTCACGGACGAGCAGCGCGAGATGTACGAGTCGGTACTGTCGACCTGGAAGCCGGTCATGTACCCCAAAAGGACCAAGCGGTACATCTGTCAGAAATGTACCAAAGAGTTCAAAAACTACCAGAACCTCTACCTCCACACGACCAGGGTGCACTCCTCCAAAGAGTCTGCGGTTATTTGCGACATATGCGTGAAGACCTTCAAGAATAAACATTACTTGTACATGCACCGGATGAACAAGCATTATTCCGAATCGGAGAAGTGCTACTGCCAGTTCTGTTACCAGGAGTTCAGGACGCGGAGGGCGCTGCACATGCACGTCAAGCGCGCGCACCCCACCACGTTGCCGGAGATCAAGTGCCCGGACTGCGGGAAGCAGTTCAGCGTGCCGTACAAGCTACGCTACCACATGGACGCGTGCCACCGGGACGACAAGGACAAGTACAAGTGTCACATCTGCGACAAACTGTACAAGAGCCACATCAACCTGAACAGGCACCTGCACTTCCAGCACTCGCAGGTGGAGCGGCACCGCTGCGTCTTCTGCCCGATGACGTTCAAGTCGCGCCACCACATGAAGCGGCACATCCTGAACATCCACCCGCCGCTGGAGTCCAAAGTGCAGTGTTCCGAATGCCTGAAGGAGTTCAAAAACGACCAGTACCTGAAGGAGCACATGCAGGTGCACACGTCGTTCGAGAAGAAGGTGAAGTGCGATCTGTGCGAGAAGTACTTCCACTCGACGGTGCGCCTGAAGAAGCACAAGAAGATCGTGCACCCGGACAAGCCCAAGATACGCTGCGAGAAGTGCGGCAAGGAGTTCGCGCACGCGCACTACCTGCGCCGGCACAACAACTCGGTGCACGTGCAGGTGGACGAGACCAACTATCAGCACGAGTGCGGCCAGTGCGGCAAGAAGTTCAAGATCAAGCGCTACCTGTCCAACCACCTGCACAGGCACGAGCAGCAGCACCTGAAACGGATATCGCAGATGGTGAAGACGGTGATGAACGATGACGGGCAGGAGGTGAGGGTGATGAAGCAGCGCGGGCGGCCGCGCAAGTTGCGCAAGGAGATCGAGTTCATAAAGTGCGAGCCGGTCTCCAGCTCGGACTCCGGCTCCGACGAGACCGACACGGAGTCCGAGTGA
Protein Sequence: MEEPIRIPKEETEKTEVPANSPTPSQPLKFISVTSSILTDEQREMYESVLSTWKPVMYPKRTKRYICQKCTKEFKNYQNLYLHTTRVHSSKESAVICDICVKTFKNKHYLYMHRMNKHYSESEKCYCQFCYQEFRTRRALHMHVKRAHPTTLPEIKCPDCGKQFSVPYKLRYHMDACHRDDKDKYKCHICDKLYKSHINLNRHLHFQHSQVERHRCVFCPMTFKSRHHMKRHILNIHPPLESKVQCSECLKEFKNDQYLKEHMQVHTSFEKKVKCDLCEKYFHSTVRLKKHKKIVHPDKPKIRCEKCGKEFAHAHYLRRHNNSVHVQVDETNYQHECGQCGKKFKIKRYLSNHLHRHEQQHLKRISQMVKTVMNDDGQEVRVMKQRGRPRKLRKEIEFIKCEPVSSSDSGSDETDTESE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00943106;
90% Identity: iTF_01402909;
80% Identity: iTF_01495262;