Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000456.1:450759-456824[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.057 5 8.3 1.3 1 23 239 261 239 261 0.93

2 10 1.9 1.6e+02 3.5 0.0 3 20 284 301 282 302 0.93

3 10 0.006 0.52 11.4 1.4 3 23 329 349 327 349 0.95

4 10 0.017 1.5 10.0 2.4 2 23 354 375 353 375 0.96

5 10 3.6e-05 0.0031 18.4 2.4 1 23 382 405 382 405 0.96

6 10 0.32 28 5.9 0.2 1 23 411 434 411 434 0.93

7 10 4.2e-05 0.0037 18.2 2.2 1 23 440 463 440 463 0.97

8 10 5.8e-05 0.0051 17.7 1.5 1 23 469 491 469 491 0.98

9 10 3.6e-07 3.1e-05 24.7 0.7 1 23 497 519 497 519 0.98

10 10 2.5e-07 2.2e-05 25.2 2.5 1 23 525 548 525 548 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.057	5	8.3	1.3	1	23	239	261	239	261	0.93
2	10	1.9	1.6e+02	3.5	0.0	3	20	284	301	282	302	0.93
3	10	0.006	0.52	11.4	1.4	3	23	329	349	327	349	0.95
4	10	0.017	1.5	10.0	2.4	2	23	354	375	353	375	0.96
5	10	3.6e-05	0.0031	18.4	2.4	1	23	382	405	382	405	0.96
6	10	0.32	28	5.9	0.2	1	23	411	434	411	434	0.93
7	10	4.2e-05	0.0037	18.2	2.2	1	23	440	463	440	463	0.97
8	10	5.8e-05	0.0051	17.7	1.5	1	23	469	491	469	491	0.98
9	10	3.6e-07	3.1e-05	24.7	0.7	1	23	497	519	497	519	0.98
10	10	2.5e-07	2.2e-05	25.2	2.5	1	23	525	548	525	548	0.98

Sequence Information

Coding Sequence: atgagtGCCAATACACGAAAGGGGCCAATTATTGACCCCGGTATGTGCCGATGTTGTGGTTCCTTAAAGAAATGTCGTTTGCTTAATGTAGAATATGAATGGCAGGGGCAGAAGGAAATTTACTCCGATATGTTTGTGGATTGTTTTGGTCTTTTGttaTCACATCTAGAAGGTGCACCTACGGACTGTTTGATATGCGCCACTTGTGTATCCAGGCTCCGCGAAGCATGCGCTTTCCGccaacaggtgctgcggtgcGAGGAGAGACTGCTCGCTAACAAATTAAATCtacatgatgatgataGAGTGCCAAAAGAAGAAATCCGATTTGTATCAGGGTTAAAAAATGAGAATGTGGTCAGTAATGAAACTGACGATGACCAGCAAGCTGATGTTATTATGAATGAATTGGACGAAGTTCTTTCGGTTCGTAAGAGGAGTATGAGAAATTCGGTTAAAAGCAAAAAGTCCACGAAGAGAAGAAAAACGAAGTCGAAGATCACGAGGGCAGTGAAATCGCAGCACGAATTAATAATTCCTCTTCAACATATCAATGAGCATGCGAAGAAGTTAAAATGTGAAGATCCAGCACTAGCGCACAGCGATACTtcgaacaatattaaaaatatcgataACGATACGAAAGCTTATCGCAACACCATCACAATAGTCGAGAGCTCCTACGTGTGCCCGTTCGACACCTCGTTCAGCGATTACTTCTGCATATACTGCAGGCAGCAGTTCACGGAACCCAACAAACTGCGGGAGCACACGCTGACCCACGACCCTTTAACGTACAAGGAGCTGCCGCACAAGAAGACTCTACAAATCGATATTGTTAAAATCGATTGCAGACTCTGCCCGCAGAAAATCGATACTATCGACGATTTAAAAAGTCACATCACTTGCGCTCACGATAAGTACCTGTATCCGAATATGAGTAACGAGTTCCTCAAGTTCCGCTTGACGACCGGAAGGCTGGCGTGTACGGAGTGCAGCAACTCTTACACATTCTTCCACGCTTTAAAGAAGCACATGGCGGAGCACTTCGGCACCTGCATATGCGACGTCTGCGGCGCTCACTACTTCCAGGAGAGGATGCTGCTGCTACACCAGAAGACTCACCAGAGGATAGACGAGAACTACCCGTGCAAGGAATGCGGCAAGATGTTCAAGTCGAAACACAACAGGTACCTTCACATCGCCCGGATGCACAAGAAGGAACCGGCTTACCCCTGCGCCAAATGCGACGAGGTCCTGTTCTCGTACACCTTACGATACCGTCACATGATAGAGGTACACGGGGACAAGAGGCTCTTCCAGTGCGAGGAGTGCGACAGGACCTACGACAGCAGGAAGTCGCTGAGGGAGCACAACAGGCGGTTCCATTTGAAGATATTCAAGCACCAGTGCGATCTGTGCGACAAGAGGTTCTACTTACCCTCGCGGCTGAGGGAGCACATGGCGTCGCACAGCGGCGAGAGGAACTTCCGCTGCGAATATTGCGGCAAGAGCTACCCAAGGCTGCGCGGCCTGAAGGTCCACATGCAGTCTCACACCAACGAGAAGAAATACAAGTGCACATTGTGCAACACATCATTCACTCAGAACGTCAATCTGAACAACCACATGAAGAGGCAGCATCAGAACATGGAGATGGAAGATGTTTACCATGAGTAG
Protein Sequence: MSANTRKGPIIDPGMCRCCGSLKKCRLLNVEYEWQGQKEIYSDMFVDCFGLLLSHLEGAPTDCLICATCVSRLREACAFRQQVLRCEERLLANKLNLHDDDRVPKEEIRFVSGLKNENVVSNETDDDQQADVIMNELDEVLSVRKRSMRNSVKSKKSTKRRKTKSKITRAVKSQHELIIPLQHINEHAKKLKCEDPALAHSDTSNNIKNIDNDTKAYRNTITIVESSYVCPFDTSFSDYFCIYCRQQFTEPNKLREHTLTHDPLTYKELPHKKTLQIDIVKIDCRLCPQKIDTIDDLKSHITCAHDKYLYPNMSNEFLKFRLTTGRLACTECSNSYTFFHALKKHMAEHFGTCICDVCGAHYFQERMLLLHQKTHQRIDENYPCKECGKMFKSKHNRYLHIARMHKKEPAYPCAKCDEVLFSYTLRYRHMIEVHGDKRLFQCEECDRTYDSRKSLREHNRRFHLKIFKHQCDLCDKRFYLPSRLREHMASHSGERNFRCEYCGKSYPRLRGLKVHMQSHTNEKKYKCTLCNTSFTQNVNLNNHMKRQHQNMEMEDVYHE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115923;
90% Identity: iTF_01494544; iTF_01495253;
80% Identity: iTF_01495253;