Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000435.1:2380981-2387876[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 2.6e-05 0.0023 18.8 2.3 1 23 277 299 277 299 0.99

2 13 0.018 1.5 9.9 2.5 1 23 307 330 307 330 0.95

3 13 2.3 2e+02 3.2 0.4 1 23 334 357 334 357 0.87

4 13 0.00031 0.028 15.4 3.8 1 23 432 454 432 454 0.99

5 13 0.0022 0.2 12.7 2.3 2 23 463 485 462 485 0.96

6 13 1.1 95 4.3 4.5 1 23 489 511 489 511 0.98

7 13 0.00017 0.015 16.2 4.0 1 23 516 539 516 539 0.98

8 13 0.083 7.3 7.8 2.8 3 23 545 566 544 566 0.96

9 13 0.027 2.4 9.3 0.2 2 19 586 603 585 606 0.93

10 13 3 2.6e+02 2.9 0.2 2 23 652 674 651 674 0.90

11 13 2.7e-06 0.00024 21.9 1.3 1 23 683 705 683 705 0.98

12 13 2.8e-05 0.0024 18.7 1.2 1 23 711 733 711 733 0.97

13 13 5.7e-06 0.0005 20.9 0.8 1 23 739 762 739 762 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	2.6e-05	0.0023	18.8	2.3	1	23	277	299	277	299	0.99
2	13	0.018	1.5	9.9	2.5	1	23	307	330	307	330	0.95
3	13	2.3	2e+02	3.2	0.4	1	23	334	357	334	357	0.87
4	13	0.00031	0.028	15.4	3.8	1	23	432	454	432	454	0.99
5	13	0.0022	0.2	12.7	2.3	2	23	463	485	462	485	0.96
6	13	1.1	95	4.3	4.5	1	23	489	511	489	511	0.98
7	13	0.00017	0.015	16.2	4.0	1	23	516	539	516	539	0.98
8	13	0.083	7.3	7.8	2.8	3	23	545	566	544	566	0.96
9	13	0.027	2.4	9.3	0.2	2	19	586	603	585	606	0.93
10	13	3	2.6e+02	2.9	0.2	2	23	652	674	651	674	0.90
11	13	2.7e-06	0.00024	21.9	1.3	1	23	683	705	683	705	0.98
12	13	2.8e-05	0.0024	18.7	1.2	1	23	711	733	711	733	0.97
13	13	5.7e-06	0.0005	20.9	0.8	1	23	739	762	739	762	0.98

Sequence Information

Coding Sequence: ATGATGGATCTAAAGGCTTGTGCTGTATGCTTAAGCACCGATTCCACCGAtgttaaattgtataatatggACGTAGGGATACTTCGACATGATTACAACTTAATATCTGGGCTtcgaACACAGAGGGATAACGGTCTACCTGGATACCTTTGTTATGAATGTTCCGGCTACATAAAACGATATAAACAATTTAGGTATAAATGCCAAAGAGCTCACTATGCATTAAAAACACTTCTTGATAATCGAAAACAGgTAACTAAAGCTGCCATTGAGGTGATTGACcgtaaacttataaatattttgcctTCCCTGTCTTACATAGACAGCAATAGAACTCATTATGAACAGGTCAAGTTTCAATGGGTGAAGCACAGCCGTTGCAGTAATGTAAAAGGTGAAATACCTATTGTGCATCATGATACAGCTGATGTGGGTGAAGtagaaaatgttaaaaagaaGACACAAAATGgcaatattttagtaaaaactGAACTTGATGATTCTTTCATTAAACAAGATGTTAGCTTTGATCTTTCGGACTTAAATAGTGATCAGAATACAAATGTTCCTTTTGAACAAACTACCCCACAAGAGGATAATGTTTCAATTGATGCAGATATATTTCAAGAGTTTTTCATCAGTAACCAAACTGACAATGATTTGAATGAATATGTTGATCCAGAAAGTAAAGAAAATGGTGATGTTAAACAGGAGGATGATGACATTGATGGATGTAATTTGGATGAGGAATATGCTAAAATAGTGCCTATAACAATGAAAGAAGCAAAAGCTGCAGTAGAAGTCTACAAAATGTTTAGCCATGGAAAATACTcttgtaatgtttgtacaaagtCATTTTTTAGTGAAAACCGTTTGACCAGTCACATGCGGATGCATGATAAGCATACAAGTGGAGGATACTACTGtgaattatgtaattattattacaaaactgaCTTTCTTTTGAAAACCCACATGACTGAAAAAcatatgtacaaatatatatgtagaaaatgTCCCGAGGTCAGCTTTGATAGaaccTCTGCTAAGCAACACTTTATATGGTCACATCTACAGAAAGGTAACAATAAGAATGCCAACTGGTATGAATCTCGGCCTGCATGGTTAAATAACAAAGGTGGAAAGAGAATCAAAGGAGTAGTATCACTTCGCCCTGTTAGGAGAATGAAAAAATTACCTGATGACTTCTTAGTGTACTCTCCGGTATCACAGGAGGAGCAGTACAGATTAGTGCAAGCGAGACAAAGAAGTATGAATTACATAGAGGCTGAATTTAAGTGTGAATTGTGTTATAAAGGTTTTAGGGAGACAACAACATACAACAAACATATGAGGAAGCATGACCCAGCATTCGCAGGTGAACTGCAGTGTGATGTGTGTAAACTGCATTTCAAGGATGCAAGGAAAATGTACAAACACATGAACATTACTCATCTATTCAAATACTCATGTCAATTATGTAgttatgtatgttttaataaAGGACAAGCACATTTACACTACAGGTGGCACAAGAATGTAACATATCAGTGCCAGCACTGCAATAAGGAATTCaaaaAAGCATCTACAAGGTTGACTCACATAAGGATTAAACATCCTTCAACGAATATTTGCAACCTTTGCGGACACAGCTTTGTGAGTGAGACGGGCCTGTATTGCCATCAGAGGATGACGCATAGTACAGAGGAGTTAGAGGCAAGCGAGGATACTGAGGTAGACGTTAACAACCCACTTTACTGTGCCGACTGTAAAATCCAGTTTAGGAATCAAGATGCATACAATACACACTTTGGTAGTTCCAAGAAACACTCTGCCACTAACCTCTCTATAGGTAAcagtaatcatttaaaaaacgATCGGAAGGTTAAAAAGAGGAAAGTTACCAGGCGCGAGACTTCTGTGATAATAAACAACGGCGTGCCAACTTCTACGCGATGTGAAGTGTGCGCGAAATTCCTGTCCAACGACGTGCAAGCCCGTAAGCACTATGAGGCGGAGCACCCTGGCGTGGAGTATTTGAAGCGGTATATGTGTGATGTCTGCGGTCACACCACTAAGCAATACGCGAACTTGATGGTGCACATGCGCACGCACACCAACGAGAAGCCATACCAGTGCCCGCACTGTGACCGCCGCTTCAGCATGCCCAGTAACCGGGACCGCCATCTTGTGGTACACACTGGTGAGAAACGTTACCAGTGCCAGCTCTGCAACCGTCGCTTCACGCAAAGCAGCGCTGTGAAGTTGCACATACAAACGGTGCATCTGAAGATACCGTACGCGCCATGGGACAAGAAGAACAGAAAGAGACGCCGCGAGATGGAAGCCGCGTCGCTTCCGGTGATGCAGCCCCCCGTGCAGCACAAGGTGATCTTCGAGTCCAACACGGACTATCTCAACGCGTACATATCATATAACGATGAGTGA
Protein Sequence: MMDLKACAVCLSTDSTDVKLYNMDVGILRHDYNLISGLRTQRDNGLPGYLCYECSGYIKRYKQFRYKCQRAHYALKTLLDNRKQVTKAAIEVIDRKLINILPSLSYIDSNRTHYEQVKFQWVKHSRCSNVKGEIPIVHHDTADVGEVENVKKKTQNGNILVKTELDDSFIKQDVSFDLSDLNSDQNTNVPFEQTTPQEDNVSIDADIFQEFFISNQTDNDLNEYVDPESKENGDVKQEDDDIDGCNLDEEYAKIVPITMKEAKAAVEVYKMFSHGKYSCNVCTKSFFSENRLTSHMRMHDKHTSGGYYCELCNYYYKTDFLLKTHMTEKHMYKYICRKCPEVSFDRTSAKQHFIWSHLQKGNNKNANWYESRPAWLNNKGGKRIKGVVSLRPVRRMKKLPDDFLVYSPVSQEEQYRLVQARQRSMNYIEAEFKCELCYKGFRETTTYNKHMRKHDPAFAGELQCDVCKLHFKDARKMYKHMNITHLFKYSCQLCSYVCFNKGQAHLHYRWHKNVTYQCQHCNKEFKKASTRLTHIRIKHPSTNICNLCGHSFVSETGLYCHQRMTHSTEELEASEDTEVDVNNPLYCADCKIQFRNQDAYNTHFGSSKKHSATNLSIGNSNHLKNDRKVKKRKVTRRETSVIINNGVPTSTRCEVCAKFLSNDVQARKHYEAEHPGVEYLKRYMCDVCGHTTKQYANLMVHMRTHTNEKPYQCPHCDRRFSMPSNRDRHLVVHTGEKRYQCQLCNRRFTQSSAVKLHIQTVHLKIPYAPWDKKNRKRRREMEAASLPVMQPPVQHKVIFESNTDYLNAYISYNDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115908;
90% Identity: iTF_01115908;
80% Identity: -