Tobl023188.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- Zfx
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000452.1:649306-655856[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 5.7e-05 0.005 17.7 0.9 2 21 169 188 168 189 0.94 2 18 0.02 1.8 9.7 0.4 1 23 222 245 222 245 0.97 3 18 1.6e-05 0.0014 19.5 1.4 2 23 251 272 250 272 0.95 4 18 0.037 3.3 8.9 2.8 2 21 276 295 275 296 0.93 5 18 0.011 1 10.5 1.1 2 23 336 358 335 358 0.94 6 18 3.6 3.1e+02 2.6 0.3 3 23 366 385 365 385 0.88 7 18 0.0018 0.16 13.0 1.2 1 23 391 413 391 413 0.98 8 18 0.0013 0.11 13.5 0.7 1 23 419 442 419 442 0.97 9 18 0.012 1.1 10.4 0.4 1 23 451 474 451 474 0.93 10 18 0.00019 0.017 16.1 3.8 1 23 483 505 483 505 0.98 11 18 0.00016 0.014 16.3 0.1 2 22 638 658 637 658 0.95 12 18 2 1.7e+02 3.5 0.5 1 23 689 712 689 712 0.94 13 18 0.00016 0.014 16.3 2.3 1 23 717 739 717 739 0.95 14 18 0.59 52 5.1 7.7 1 22 742 763 742 763 0.94 15 18 0.0047 0.41 11.7 1.9 1 23 775 798 775 798 0.95 16 18 0.042 3.6 8.7 1.5 1 23 804 826 804 826 0.93 17 18 1.5 1.3e+02 3.9 0.8 1 23 860 883 860 883 0.90 18 18 0.00018 0.016 16.2 1.8 1 23 891 914 891 914 0.96
Sequence Information
- Coding Sequence
- ATGAGCCGGCAAATAGACATAAAAGCCTTGGTTTCGCACGTAGTGCGCGGTGACGGCATAAATAAATGTAGAATATGTATGGGTGATACCACGGAAGGTCAGGTGTTTCTCGGCGACACCGTAATGATGGACGGAGATCAACCGGTGACCTTATCAGAGCTATTGGAAACTATAACAGGAGTTGAGATGCCGATGAGCGAGGACCTGCCATACAGCCTGTGCTCAGCTTGCTCGCTCTGTGCCCTAAGAGCAGGCCAATTCCGGACGATCTGCAGACAGGCGGCCCACAAGTGGGACTCCATGTTGCAACTACTAAGCACTATACCCGAAGTCGTGAACAAAACCAAAACTTTATTCGCAATCGTCGAGATGGATCAGATGATTCTGTTCGATGATTGCGATGATTTACCCAACGCGAAATTAGCCGCCGATAAACTTAATCTCAGGTTGAAACCGGAAATTGAAACAGAGGATGTTAACGAGACAGGAAAAAATCAGCGGTGCCAGTGCCCAGATTGTGGCAAGAAGTTTGTGTACGCTCAGCAGTTGTATCAGCATCTGAAGGAAGCTACGGATTTCAAGAGAGCGTGTTATGTATGTGCGAAAATTATGAGCAGGGATGAGTTAGTGTTACATTTAAACGAAGACCACAATCATGAGCCGTATGCCTGCAAAAAGTGCCCTGCCCTGCTACGATCCTACAGCCAGTACGCTCGACATTTACAGAAAGCCCACTCACGAGGCTCGTGCACTTGTGGCGAGTGCGGGAGAAGCTTCAGAACATCCAACGCTTTCCGCGCCCATCTCTCCATTCACTCCATCAAAACTTGCCCCGGCTGCGACAAGTTGTTTCGCAACCAAACCTGCTATTTGTACCACACAAAAAAGTGCTGCAACTTAGACAGTAAACGAGAAGCGTATAAAGGCAGGATTGTTGAAGTGAAGAACCGGAGGAGCGACAAGAGCATCAAAGTCGGATTGCGCGGGAGGACAAACAAAGAGTGCATTTGTGACTACTGCAAGAAGAAATTCGCAGGAAAGAGATTCGTTTCCGCTCACATACAAATAGTCCACATGAAGAACACGCACCGGCCCTGCGTGTACTGCGGGAAGTACCTCGCGGCGGCGCACATGACGGAGCACGTGAAGAGGCACGAAGAGACCAGGTTGTACAAATGCGGACACTGCGGCATCGTCTTGAAGACCAAATTGGGTTACAGTCAGCATTTGCGTCTTCACAGCGGCGAGCGGCCGTACGCCTGTCAGTACTGCGGCGAAACCTTCTCGGCATCTTCAAGGAGGTCGGAGCATATACGCAAGACGCACAGGAGTTCGGAGATCGTCCTCAAGCACGCGTGCGAACAATGCCCGGCAAAATTCCGGCTCCCATACAGACTGAGGAAGCACGTGGCTTCTGTGCACAATGCGGATAAAGATGACTCGCTGTTCGAATGCTCAGAGTGCCACGAGAAATTCAGCAGCGCCAGGGGGCTGCTGCATCACAGCAGGACCCACCAGCACCTATTATCTGGTGCAAGGAAGCCGACGAACGAAATGAAATGTAAGGTGTTCAGCGAGCCGGTGAAGGAGGAGGTGGAATTGCCGCGGGGCGTCTGCTCCGCATGCACGAGGATGGCCTTGGCAGCGATACATTTTCGTAAACTCTGCCACGAGTCGAAGAAGCACTGGGCGCTCGCCACCTCCTACCTTGCACAAATCCCCACGTCACTGCCTGAGGAGAAAACATTCTTCCTGTTCTATAACGAGGAGACAATTCTCCTCAAAGACAAGAATCAAACATCAACTGTAGCCGAAGCGGCTAGTAAACTAAACCGGCGTGATCAACCAGCAAGCGTCTGCGTGAAGAAGTCTGTAAGGAAATCCCAAAAGCCGCGTAAAGGCGTGCGCTGGAAGTGCGAGGACTGCGGCAAGGACTTTAAAATACCTTTCGATTTGAACGAACACTTGAGAATGAGTATGAAAAGAGCTTGCATCCATTGTGGACTGATCATAAAAAGGGAAAAGTTACACCAACATTTGGATAATGTGCACAACATTGATTTGTTCCACTGCACAATATGCTTCGACCTGTTCCAAGAGCCGGGGGATCTGGAGCAGCACAAGGAAACAGCTCACAGTGCGCTTTCCCACGTGTGCAATTATTGTAAACGCGGATTTGTAAACCATAGAGCTCTGCAGGCGCATATGTATGCGCACACGCTGTTCCACTGCCTTTCGTGCAACAGGAGCTTCGACAACAGGAGGTGCTACAAGCACCACATCAAGCGCTGCAGTGGCTCGAAGAGACCCCCGAAATCGCTTTACGAGTGCCATGACTGCGGCAACAAGTACCTAAACAAGGAGTCCCTCAGGACCCACATCGAGCAGAAACACTTGCGAGTTCTACCCTTCATTTGTCAGGATTGCGGGAAGAGGAGTTCGACCCTCGGCCATCATAAAGCACACGAAGCGATCCACGTGCCCAAGAGAAAAGTCTTCCAATGTTATTGCGGCGCAAAGATGCTCACCGAGCTGGGTTTCAATCTGCACCAGAGGATTCATTCGGGTGAAAAGCCCTACGAATGTCAAGAGTGCGGTGATCGATTTCTGTCTTCGTCGCGACGCTTGGATCACATTAAAAGGCGCCACACTAACACCAAAGACATGCCTCATTCGTGTACGAAGTGCTCCGCCAGGTATATCAGACCATCGCAGCTTCGGAAGCACTACCAAGTCGCTCACGGTGGCTCCAGCTGA
- Protein Sequence
- MSRQIDIKALVSHVVRGDGINKCRICMGDTTEGQVFLGDTVMMDGDQPVTLSELLETITGVEMPMSEDLPYSLCSACSLCALRAGQFRTICRQAAHKWDSMLQLLSTIPEVVNKTKTLFAIVEMDQMILFDDCDDLPNAKLAADKLNLRLKPEIETEDVNETGKNQRCQCPDCGKKFVYAQQLYQHLKEATDFKRACYVCAKIMSRDELVLHLNEDHNHEPYACKKCPALLRSYSQYARHLQKAHSRGSCTCGECGRSFRTSNAFRAHLSIHSIKTCPGCDKLFRNQTCYLYHTKKCCNLDSKREAYKGRIVEVKNRRSDKSIKVGLRGRTNKECICDYCKKKFAGKRFVSAHIQIVHMKNTHRPCVYCGKYLAAAHMTEHVKRHEETRLYKCGHCGIVLKTKLGYSQHLRLHSGERPYACQYCGETFSASSRRSEHIRKTHRSSEIVLKHACEQCPAKFRLPYRLRKHVASVHNADKDDSLFECSECHEKFSSARGLLHHSRTHQHLLSGARKPTNEMKCKVFSEPVKEEVELPRGVCSACTRMALAAIHFRKLCHESKKHWALATSYLAQIPTSLPEEKTFFLFYNEETILLKDKNQTSTVAEAASKLNRRDQPASVCVKKSVRKSQKPRKGVRWKCEDCGKDFKIPFDLNEHLRMSMKRACIHCGLIIKREKLHQHLDNVHNIDLFHCTICFDLFQEPGDLEQHKETAHSALSHVCNYCKRGFVNHRALQAHMYAHTLFHCLSCNRSFDNRRCYKHHIKRCSGSKRPPKSLYECHDCGNKYLNKESLRTHIEQKHLRVLPFICQDCGKRSSTLGHHKAHEAIHVPKRKVFQCYCGAKMLTELGFNLHQRIHSGEKPYECQECGDRFLSSSRRLDHIKRRHTNTKDMPHSCTKCSARYIRPSQLRKHYQVAHGGSS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -