Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000162.1:134034-142607[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.4e-05 0.0074 17.2 2.7 1 23 283 305 283 305 0.99

2 11 7.1 6.2e+02 1.7 0.1 1 23 312 334 312 334 0.87

3 11 0.062 5.4 8.2 0.3 1 23 338 361 338 361 0.96

4 11 0.031 2.7 9.1 6.2 1 23 368 390 368 391 0.95

5 11 1e-06 9.1e-05 23.2 0.3 2 23 397 418 397 418 0.97

6 11 0.0013 0.11 13.5 1.5 1 23 424 446 424 446 0.96

7 11 0.0011 0.098 13.7 3.4 1 22 452 473 452 477 0.93

8 11 0.0063 0.55 11.3 1.4 1 23 485 508 485 508 0.97

9 11 0.0083 0.73 10.9 0.1 1 23 514 537 514 537 0.97

10 11 7e-06 0.00061 20.6 1.0 1 23 546 568 546 568 0.98

11 11 1.4e-06 0.00013 22.8 0.5 1 23 574 597 574 597 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.4e-05	0.0074	17.2	2.7	1	23	283	305	283	305	0.99
2	11	7.1	6.2e+02	1.7	0.1	1	23	312	334	312	334	0.87
3	11	0.062	5.4	8.2	0.3	1	23	338	361	338	361	0.96
4	11	0.031	2.7	9.1	6.2	1	23	368	390	368	391	0.95
5	11	1e-06	9.1e-05	23.2	0.3	2	23	397	418	397	418	0.97
6	11	0.0013	0.11	13.5	1.5	1	23	424	446	424	446	0.96
7	11	0.0011	0.098	13.7	3.4	1	22	452	473	452	477	0.93
8	11	0.0063	0.55	11.3	1.4	1	23	485	508	485	508	0.97
9	11	0.0083	0.73	10.9	0.1	1	23	514	537	514	537	0.97
10	11	7e-06	0.00061	20.6	1.0	1	23	546	568	546	568	0.98
11	11	1.4e-06	0.00013	22.8	0.5	1	23	574	597	574	597	0.96

Sequence Information

Coding Sequence: atggacATAGATATAGAAAAGTGTCGCGACGATTTTAAAACCGGAAACGAGGTTACAGGGAAGATATGCCGCTGCTGTTTGTCCAAGGGCAGGCGCTGTACTAATGTTATTCCGTACAGTGGATTATTTTACGATTTAGCCGGTGTTACGGTAACAGAGTCGGATGGATTACCTCAGTGGCTGTGCTGGGAGTGCACTATCTTGTTGCAGAGGTCTGTTAAGTTTAAGCAGAAGCTACATAAGGCACATCTACTGCTTTATGAATACCTCACCAGATGTGCACCTTTCCCAATAGATGGTCAAGATCCGGAACTGAACAAATATGAAAGTCCTCAGCTAAATTCCACCGTAACTCTCGTGTTTGACACTGGTGGTAGAAGTAAGACTGGTTTTCATAAGGTTCTTGAGCATGAGAAACATATACAAGTACCTGCATTAGATGACATCACATTACCCTTAGTGATAGATAAGATTGAAGATGAGGTTAAAGAAGAAACTGGCTTCTCTGATTATGAAGACAATGTACCGTTAGAGGAGTACAGTACAAATGTCACCAAGTTAGACGATGACGTAACAAAACTACTCGAAGACGCTGACAAAGAGTCAGCGGAAGGAGCTGAAGGGAAGAAGAGAAAAAGGAAAACGAAAAAGAAAGAGGAGAAACCgaagaaaaagaaaagCACCGAAGCAACAGAAGAGGAGACACAAGAAGAGAAGACTGAACGGAAAACCTCCACAAGGAAACTGGTAGAGCTCGATCCGAATAAGATACGGATTGTTGTGCTGAATCCTGAGGAGCAAATTAGACAGAGGGAGGAAGAGAGCAAGGCGTCCCTCAAGTTTCCCTTCCAGTGCAATATGTGCTTCAAAGGTTTCAACTTTGAGTCCAAATTAGAGAATCACTTGAAGAAGCACAGCCCGTCGCGCGGCACGTACAAGTGCTCGCTGTGCCTGATGTACCTGCCGACCGCGTACAGCGCCAGCGTGCACGCGCTGATACACACGCGCCGCTACGAGTGCGTCAAGTGCGGACGGCGCATGACCGACCGCGCATCCATACTGGACCATTACAGCACGCAGCACGAGGGTGTCCTGAAGCTGTACACGTGTCACATCTGCGGGAAGGTTTCCAACAACAACAAGACGCACCGCGGCCACATACGCAACCATCACTCCGGCGATCGGCCGCGCTGCGACCAGTGCGGCAAGAGCTTCGTCAACAAGGACTCGCTGGCGGAGCACCAGCAGATCCACGAGGGCGTGAAGCACTACGCGTGCGCGCTGTGCGGGGCGCGCTTCCGCACGCGCACGCAGATCAAGCACCACCAGGTGAAGCACTCGGACGCGCGCGACTACTACTGCGTCGAGTGCGACGTCAGGTTCAAGTCCGAGCACAGTCTGAAACACCACCTGCAAAGGAGCTTGAAGCACATGGATCTGCAGAGTCTGAAGTATCAGTGTACGCGGTGCGAGAAGCGGTTCGCGTGCGAGGGCGCGCTGCGGCAGCACGCGCGTGTGCAGCACGAGGGCGAGCGCGCGCACCGCTGCGCGCAGTGCCCCGCCGCGCTCGCGTCGCGCAACTCGCTCGCGAAGCACGTGCGCTCGGTGCACGCGGGCGCGCGCCCCCCGCCGCGCCACGTGTGCGACACCTGCGGCCGCGCATTCCGAGGCAAGAGCGTGCTGACCAACCACGTGCGCACGCACACCGGCGAGAAGCCGTTCGCGTGCGGCGAGTGCGGGCGGCGCTTCACCCAGCGCACCGCGCTGCGCACGCACCAGCGGCTCGTGCACCTCAAGCTGCGTCGCAGCGCGAAGATCAAGCCGGAGCCGCCAACCGACGCCCAGGAGTCGAAGCCGGCCGAGATATTCCCCAAAGAGGACGCGTCCCTGCCCTTCCACAACTGGGGCAGACCACAGTGCGACGTATACTTCCGGGTTACCGCCGGACCGTGA
Protein Sequence: MDIDIEKCRDDFKTGNEVTGKICRCCLSKGRRCTNVIPYSGLFYDLAGVTVTESDGLPQWLCWECTILLQRSVKFKQKLHKAHLLLYEYLTRCAPFPIDGQDPELNKYESPQLNSTVTLVFDTGGRSKTGFHKVLEHEKHIQVPALDDITLPLVIDKIEDEVKEETGFSDYEDNVPLEEYSTNVTKLDDDVTKLLEDADKESAEGAEGKKRKRKTKKKEEKPKKKKSTEATEEETQEEKTERKTSTRKLVELDPNKIRIVVLNPEEQIRQREEESKASLKFPFQCNMCFKGFNFESKLENHLKKHSPSRGTYKCSLCLMYLPTAYSASVHALIHTRRYECVKCGRRMTDRASILDHYSTQHEGVLKLYTCHICGKVSNNNKTHRGHIRNHHSGDRPRCDQCGKSFVNKDSLAEHQQIHEGVKHYACALCGARFRTRTQIKHHQVKHSDARDYYCVECDVRFKSEHSLKHHLQRSLKHMDLQSLKYQCTRCEKRFACEGALRQHARVQHEGERAHRCAQCPAALASRNSLAKHVRSVHAGARPPPRHVCDTCGRAFRGKSVLTNHVRTHTGEKPFACGECGRRFTQRTALRTHQRLVHLKLRRSAKIKPEPPTDAQESKPAEIFPKEDASLPFHNWGRPQCDVYFRVTAGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00180685;
90% Identity: iTF_00249889;
80% Identity: iTF_01495228;