Tobl023309.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000453.1:443870-448630[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.042 3.6 8.7 2.7 1 23 70 93 70 93 0.93 2 20 0.00021 0.019 15.9 0.6 2 23 117 139 116 139 0.95 3 20 0.072 6.3 8.0 0.6 2 23 162 183 161 183 0.96 4 20 0.0019 0.16 13.0 0.4 1 23 187 209 187 209 0.98 5 20 0.65 57 5.0 5.3 1 23 214 237 214 237 0.82 6 20 0.12 11 7.3 0.9 2 23 245 267 244 267 0.93 7 20 0.00026 0.023 15.7 1.1 2 23 275 297 274 297 0.96 8 20 0.0041 0.36 11.9 3.6 1 23 303 325 303 325 0.97 9 20 0.011 0.92 10.6 3.2 1 23 331 353 331 353 0.99 10 20 4.5e-05 0.0039 18.1 0.3 1 23 359 382 359 382 0.96 11 20 0.0095 0.84 10.7 0.1 1 21 469 489 469 492 0.90 12 20 0.63 56 5.0 0.3 2 23 518 540 517 540 0.95 13 20 0.0026 0.23 12.5 0.1 2 23 562 583 561 583 0.96 14 20 0.0078 0.68 11.0 0.5 1 23 666 689 666 689 0.93 15 20 0.048 4.2 8.5 0.2 2 23 716 738 715 738 0.96 16 20 0.035 3.1 9.0 1.1 2 23 761 782 760 782 0.96 17 20 1.3 1.1e+02 4.1 0.1 1 13 786 798 786 808 0.85 18 20 0.00066 0.058 14.4 1.7 1 23 813 836 813 836 0.95 19 20 0.36 32 5.8 1.2 2 21 844 863 843 866 0.80 20 20 0.00097 0.085 13.9 1.1 2 23 874 896 873 896 0.95
Sequence Information
- Coding Sequence
- ATGAGCTGCTCATGTGGCGTAATGGGTGAACAACGAAAGACAACATGTAAAGCACCAGTCCCGGAAAAGGACTTAAAGCAATCTGATGTGACGAGAGATGTCGCTGAGAAGAAACCGATAAGAGAGTTTAGGAAGCATCAGGAGAATCTAAAATGCATCTTGCAGTACTCCAATGCCAGCCTGATACGGGGGAAGAACAGTGACGGTTACAGTTGCAACTTCTGCCCGAAACGCTACCACTTACCGCGGGAACTGAAGACTCATTTCCTTCAAGAGCACAACGAGTTACAGCTGAAGCAGTTGCCGAAATTCACCGACTATCTGCTAAAACTCGACATCACAAATTTAAAATGTCAATTATGCGAACGGGTCTTCAGCAAATTGGATCAGTTCACGGATCATCTTCGAGAAGACCACAAAGTAACCATGTACACGGATATCAATAACGAAATAATTCCGTTCAAATTCGACTCGGATACTTTACGGTGTGATGTGTGTGAGGCGGAGTTCACCAACTTCAAGATACTGCAGGAGCATATGCACGTGCATTTCAGCAATTACTATTGCGATATCTGCAGCGCCGGCTTCGTCTCCAAGCGTCGGCTGGTCGGCCACCAAAGGCGGCACGGCGGCGGTAGTTTCAAATGTGATCACTGCGAGAAAGTCTTCAGCTGTAATCAGAAACGTCGGGACCACGAGCAGAGGATCCACCTTGGTCTCAGAAAACGTAACAAATGCAAATTCTGCGACGAAAAATTCGCTGATTATTGGACTAAAGTCGACCACATGGTCAAAAAGCACAACGTGCCAAGGATGATACTCAAGTGTCAGGCGTGCGAGCGGACCTTCGAGAACAAGAGGGCCCTCACCCGGCACGTGAAGAAGGATCATCTTATGGAGAGGAAGCACGTTTGCACCGTGTGCGACATGCGGTTCTACTTGAAGCATCGTTTGAAGGACCACATGCTGGTGCACACCGGCGAGAAGCAGTTCCAATGCCACGTCTGCTCCAGGTGGTATGCGACTAAGAAATCAGTGAGGCAGCATCTGAGGTCGCACGCGGACGACAGGCGGTACTCGTGCGACACTTGCGGGCAGGCGTTCGTGCAGCAGACCACCATGATGAACCATATCAGAGCTAAACATGGTGATGGAAGCAGCGAAAACTGTCCCGGATACAGGATAGAGCATCAATCGAACAAGAATATAAAGCTGGACGTCAAAAAGAATTTCACCACATTCATAGCGATAAGACCGCAGATCGCAGTTCCGAGGTCGAGGATTAAAACGTCGAAGAGGAGACCGGCGAAGAAGACAACGGAACTGGAGCTCCACTTCGAcaatataaaatccattctccgATGCTCCAACGCGACGCCGATCAGGTGCCGGATCGGATCGAAATACGCGTGCGGGTATTGCACCAACCGGTACTCGACTCCGGCGGAGCTCAAAGAGCACACCGTGGACCTTCACGCGGCAGACAAACCGGAGTGCCTCCGTATTCCATCGCTATCCAGATACTTAGTGTACCTAGACGTAACAAACTTGCAGTGCACACTCTGCGACTCCTCGATACAGAAGCTGAAAGACCTTATGTACCACTTGAAGGTGGACCACGAGCAATTGATCCATATGGATATAAAGAACCATATATTTCCATTCAGTTTCTCCGAGGAACTGCGATGTGCGGAATGCAGCAAGGCTTTCGACGTATTCGAGGATCTCTTGGAGCACATGAGTTCGCATTACAAGAACTACTCTTGTCCCCGCTCCCCCGGCATCCGCACGAAACCGAAGATTGCCTATATAGAGATATCAGCAGATTCTGTTGGCGAGAGGCGCCGGAAGAGCGCCAGGAGGAACCGCGAGCAGTCACCAGATATACATATTCTATTGAAGAAGAAGAACGAGTTGGACCTGCACCTGGACAACCTGAAGGTGATATTGACGAACTCGAACGCGACGACGATACGGTGCCGCGGCAGCATTGGGTACGTCTGCTGCTTCTGCGATCAGCAATATCCGGATCCCGCCGACTTGAAGCTGCACACCTTGGCGACGCACGACGACGTCTTTCAGTCTAACTTCATAAAGGGTCAAGCGATGCCGACGCTCCTGATCAAATTGGACATCACTAATTTACGCTGCAAAATCTGCAGCAAGGATGTAATCGAACTAAAGGACCTGTTAGACCATTTGAAGAGCGACCACgacatactgcaccacagtaATATCAACAATCACATCGTCCCGTTCAGATTCGATAGCGACACGCTGCGCTGCGTCGTCTGCAAGCACATCTTCAACAATTTCAAGGTACTCCTCGAGCACATGAACATCCACTTCAGGAACTACGTCTGCGAGGTTTGCGACGCTGGGTTCGTCAACCGGCGCGTCTCCCAGATGCACGGCTACAGGCACAAGACCGGTGTGTACCACTGCTCGTACTGCGGCAAGGAGTTCAACAACAGGGTGAAGCAGCGCGCCCACGAACGGGCGGTGCACGTTTGCCTGAATAAGCGCAGCCGGTGCGGCTACTGCGGCGAGAGATTCGCGGACTACACCAAGAAGCACGAGCACGAGGTGAGGCAGCACGGCGCCAAGCCCGTAGTCCTCACGTGCTACGCGTGCGAGAAGACATTCGACAACCAGCGGACCCTATCGCTGCACATCAAGACATTCCACTTAATGGAGCGCTAG
- Protein Sequence
- MSCSCGVMGEQRKTTCKAPVPEKDLKQSDVTRDVAEKKPIREFRKHQENLKCILQYSNASLIRGKNSDGYSCNFCPKRYHLPRELKTHFLQEHNELQLKQLPKFTDYLLKLDITNLKCQLCERVFSKLDQFTDHLREDHKVTMYTDINNEIIPFKFDSDTLRCDVCEAEFTNFKILQEHMHVHFSNYYCDICSAGFVSKRRLVGHQRRHGGGSFKCDHCEKVFSCNQKRRDHEQRIHLGLRKRNKCKFCDEKFADYWTKVDHMVKKHNVPRMILKCQACERTFENKRALTRHVKKDHLMERKHVCTVCDMRFYLKHRLKDHMLVHTGEKQFQCHVCSRWYATKKSVRQHLRSHADDRRYSCDTCGQAFVQQTTMMNHIRAKHGDGSSENCPGYRIEHQSNKNIKLDVKKNFTTFIAIRPQIAVPRSRIKTSKRRPAKKTTELELHFDNIKSILRCSNATPIRCRIGSKYACGYCTNRYSTPAELKEHTVDLHAADKPECLRIPSLSRYLVYLDVTNLQCTLCDSSIQKLKDLMYHLKVDHEQLIHMDIKNHIFPFSFSEELRCAECSKAFDVFEDLLEHMSSHYKNYSCPRSPGIRTKPKIAYIEISADSVGERRRKSARRNREQSPDIHILLKKKNELDLHLDNLKVILTNSNATTIRCRGSIGYVCCFCDQQYPDPADLKLHTLATHDDVFQSNFIKGQAMPTLLIKLDITNLRCKICSKDVIELKDLLDHLKSDHDILHHSNINNHIVPFRFDSDTLRCVVCKHIFNNFKVLLEHMNIHFRNYVCEVCDAGFVNRRVSQMHGYRHKTGVYHCSYCGKEFNNRVKQRAHERAVHVCLNKRSRCGYCGERFADYTKKHEHEVRQHGAKPVVLTCYACEKTFDNQRTLSLHIKTFHLMER
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00249887;
- 90% Identity
- iTF_00249887;
- 80% Identity
- -