Tobl023029.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Troides oblongomaculatus
Gene Symbol
-
Assembly
GCA_029032895.1
Location
JARDWC010000450.1:5968077-5977149[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00028 0.025 15.5 3.4 1 23 232 254 232 254 0.98
2 11 0.00027 0.023 15.6 6.5 1 23 260 282 260 282 0.96
3 11 0.0014 0.12 13.4 7.0 1 23 288 310 288 310 0.99
4 11 0.0013 0.11 13.5 1.3 1 23 316 338 316 338 0.96
5 11 2.9e-05 0.0025 18.7 1.0 1 23 344 366 344 366 0.97
6 11 4.9e-06 0.00043 21.1 0.0 1 23 372 394 372 394 0.98
7 11 5.9e-05 0.0052 17.7 0.4 1 23 399 421 399 421 0.96
8 11 0.00099 0.087 13.8 2.0 3 19 429 445 428 451 0.91
9 11 1.5e-05 0.0013 19.5 0.5 1 23 537 559 537 559 0.97
10 11 0.00094 0.083 13.9 3.1 1 23 623 645 623 645 0.96
11 11 3.1e-05 0.0027 18.6 4.3 1 23 655 677 655 677 0.97

Sequence Information

Coding Sequence
ATGTGTATGCCAACACCGAGTAATGTGTCGGGTTTCGGCTATTCATGGGGTTTCACCAGCTCCGCCGATCTGACGAAGGGCGAAGTAGAAACACCAAGTAGTCTGAGTTATACCTTAGGGAATACGatttCACCTGAAACCACCTTGACGGTGATGTCTCATAAGACACCGCAAGTGCAAGAAAAAGTTGGCACAGTTGCAGTGGCAGTATCAAACTCAGCAGCACAAGTTACAAGGGTTGTAGCGACTGGCACTCCGGTTACAACACGAAGAATGTTTGTGGTGAATGAGGCTCCGGCTCACACACTGAACAGGGTCACACAACAAAACCAAACTGCAACAATACAAACAACAAATCTAGCGCCTAAACCATTCCTTACACCAATTGGACCTATTCAGTTAACAGCTGAGGAATGCAATGAGATATTAATGAAACGTGCACTTCAAGCACAGGGAATAGCAACACCAGTCATTGATGCTTCCCAACTCAACCATACCTTACTAAATGGTAGTCTAAAAACTATAACGGAAGCAGCACAATCTCAAGCTGAGACAATTCAAACAACAACTGTTCACCAACATATGCTTCATACTAAGCAAGAACCAGGCACTACCAATAACTCACCTAAAACGGAGCTGCTGAGCGGCGCTGTGCTGCTCGGTGGCGGTGCGCCCGCTGTCAAGGAGCGTCCTTACTCGTGCGACGAGTGCGGGAAGTCTTTCCTCCTCAAGCATCACCTCACTACGCACGCCAGGGTGCATACAGGCGAGCGGCCGCACGTGTGCGCGCACTGCGGTAAAGCGTTCGCGCGCAAGCACTGCCTCAACACACATCTGCTGCTGCACTCCGCGGACCGGCCCTACAAGTGCCACGAATGCAAGATGGCTTTCACGCTTAAGCATCACCTCGTCACACATTCGAGGGTACATAGCCGCGGGCGTCCGTTTATGTGCGGCGAGTGTGGGCGGGGTTTTCCGTTAAAGCGACACCTCGTTACGCACAGCAAATACCACGCCGGCGAGAGACCCTACGTCTGCAGCGATTGCGGAGAGAACTTCGCGCAGAAGGAACACCTGGTAATGCACAGTCGGTTCCACGGGTCGCTGTCACCGTTCGTATGTCCGGATTGTGGCGTTGCGTTTGCTCGCAAGTTCCAGCTGGTGAACCACGGGCGCGTCCACGGTCGGGTGCCGCACGCCTGCCCAGTTTGTGGGAAAGAGTTCCTACAAAAGCGAACCCTCGTCGCGCACATGAAAATCCACACGGCGGAAGGTGTGGTTGCGTGTTTCGAGTGCGGCGAAGCGTTTAAAAGTAAGTCGGAACTACAACAACATTGCAAGATGACGAGGCATTGCTTAAGCACGTCACAGACGcaacaacagcaacaacaacaacagcagcagcaacaacaagtacagcaacagcaacaacaacaacaacagcagcagcagcagcagcaacaacaacaacagcagcagcagcagcagcaacaacaacagcaacagcaacaacaAGCTACTGTGATAAAGCAAGATGAATTTAAACCGCAAATAGTACAGgtGATAGGAGCTGATGGACAGATACTAACGGAGAAGAATACCCCAGGATACGCGTGTCCAGAGTGTGGCTCCTGTTTCAATACAAAGGAGGCGCTGTCGTTACACCTGCGGTTGCACGCAGGCGACCGTACGTGCGTGACGGACCTGTGCGCGCTCACCGCCGCGCTTCAGCCGGGCCTCGTCGCCGCGCACCACGCCACCACGCACAATCAACCAATCCAAATAATCTCGTCCAATCCTAATAACGTGGTCCACACGCAGGTCATAGCAACGAATCATCACATAACTCCGCCGCGGCCTAAGATACACTTTTGTGCGGACTGTGGGAAAGGATTTGCAGCGAAGCATGGCCTGCTAGCGCACCACAGGCGACATCCGGACGGCAGTTGCACACTCCGCACACACGTGTGCGACCAGTGTGGAAAGGCGTTTTTCCAAAAGAATCATCTAATGCTACATCAGAGGCAGCACATGGACCTGCCGCCCAGAACTTCGCAAGCGCAACAACAGGCGACTCAGCAAGCGCAGCAGCAAGCGGCGCAGCAGGCAGCGCAGCAAGCGGCGCAGCAGGTGGCGCAGCAAGTTGCGCAGCAAGTGCAGCAGCAACAacagcaacagcagcagcaacaacagcaacagcagcagcaacaacagcagcagcaacagcatcAGCATCAGACTAACCTTGATCTGGAGCAGCAGGACCACCAACAGCCGACGCACATACAAGTGGTGACCAACCGTTCGGGGCAGGTGATTGGCAACCAGATCGTGGTGGGTTCGGTGGGGGGAGTAGGATCCGTGGGTGGCGTGCAACGGAGAGTACTCGGCTCGCAGTTGCACATCATCGGTCGCGACGGCAAGCCACTGGCCACGCACAAGCCACGCCACCACAACGCAGCAGATGTTAAGGAAGTTGGCGGACTGGTGCTGTCGACGGGGAGGAGCGGGCTCATCAAGTACGAAATCTCCATACCGCCGACACCCACCGTGCTTCAGGTGCAACCGCTCGATTGA
Protein Sequence
MCMPTPSNVSGFGYSWGFTSSADLTKGEVETPSSLSYTLGNTISPETTLTVMSHKTPQVQEKVGTVAVAVSNSAAQVTRVVATGTPVTTRRMFVVNEAPAHTLNRVTQQNQTATIQTTNLAPKPFLTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTLLNGSLKTITEAAQSQAETIQTTTVHQHMLHTKQEPGTTNNSPKTELLSGAVLLGGGAPAVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHVCAHCGKAFARKHCLNTHLLLHSADRPYKCHECKMAFTLKHHLVTHSRVHSRGRPFMCGECGRGFPLKRHLVTHSKYHAGERPYVCSDCGENFAQKEHLVMHSRFHGSLSPFVCPDCGVAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLVAHMKIHTAEGVVACFECGEAFKSKSELQQHCKMTRHCLSTSQTQQQQQQQQQQQQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQATVIKQDEFKPQIVQVIGADGQILTEKNTPGYACPECGSCFNTKEALSLHLRLHAGDRTCVTDLCALTAALQPGLVAAHHATTHNQPIQIISSNPNNVVHTQVIATNHHITPPRPKIHFCADCGKGFAAKHGLLAHHRRHPDGSCTLRTHVCDQCGKAFFQKNHLMLHQRQHMDLPPRTSQAQQQATQQAQQQAAQQAAQQAAQQVAQQVAQQVQQQQQQQQQQQQQQQQQQQQQQQHQHQTNLDLEQQDHQQPTHIQVVTNRSGQVIGNQIVVGSVGGVGSVGGVQRRVLGSQLHIIGRDGKPLATHKPRHHNAADVKEVGGLVLSTGRSGLIKYEISIPPTPTVLQVQPLD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01402874;
90% Identity
iTF_00197541;
80% Identity
-