Basic Information

Insect: Troides oblongomaculatus
Gene Symbol: -
Assembly: GCA_029032895.1
Location: JARDWC010000453.1:512092-515163[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.094 8.3 7.6 0.0 3 23 43 64 42 64 0.94

2 17 1.9 1.6e+02 3.5 1.6 2 23 87 109 86 109 0.95

3 17 0.00026 0.023 15.7 0.6 1 23 114 137 114 137 0.95

4 17 0.027 2.4 9.3 4.1 1 23 140 163 140 163 0.93

5 17 0.0067 0.59 11.2 1.3 1 23 169 192 169 192 0.95

6 17 0.0013 0.12 13.4 2.2 2 23 200 222 199 222 0.95

7 17 0.055 4.9 8.3 0.4 1 23 227 249 227 249 0.98

8 17 8.7e-09 7.6e-07 29.8 0.4 1 23 255 277 255 277 0.99

9 17 0.007 0.62 11.2 1.5 1 23 348 370 348 370 0.98

10 17 0.093 8.2 7.6 0.1 3 23 397 418 395 418 0.94

11 17 0.28 24 6.1 0.6 3 23 442 463 441 463 0.93

12 17 3.4e-05 0.003 18.4 0.2 3 23 471 492 470 492 0.98

13 17 2.6e-05 0.0023 18.8 1.0 3 23 499 520 498 520 0.97

14 17 0.0037 0.32 12.0 2.0 1 23 526 549 526 549 0.94

15 17 0.00056 0.05 14.6 2.2 2 23 556 578 555 578 0.95

16 17 0.0086 0.76 10.9 1.8 1 23 584 606 584 606 0.94

17 17 0.00027 0.023 15.6 0.7 1 23 612 635 612 635 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.094	8.3	7.6	0.0	3	23	43	64	42	64	0.94
2	17	1.9	1.6e+02	3.5	1.6	2	23	87	109	86	109	0.95
3	17	0.00026	0.023	15.7	0.6	1	23	114	137	114	137	0.95
4	17	0.027	2.4	9.3	4.1	1	23	140	163	140	163	0.93
5	17	0.0067	0.59	11.2	1.3	1	23	169	192	169	192	0.95
6	17	0.0013	0.12	13.4	2.2	2	23	200	222	199	222	0.95
7	17	0.055	4.9	8.3	0.4	1	23	227	249	227	249	0.98
8	17	8.7e-09	7.6e-07	29.8	0.4	1	23	255	277	255	277	0.99
9	17	0.007	0.62	11.2	1.5	1	23	348	370	348	370	0.98
10	17	0.093	8.2	7.6	0.1	3	23	397	418	395	418	0.94
11	17	0.28	24	6.1	0.6	3	23	442	463	441	463	0.93
12	17	3.4e-05	0.003	18.4	0.2	3	23	471	492	470	492	0.98
13	17	2.6e-05	0.0023	18.8	1.0	3	23	499	520	498	520	0.97
14	17	0.0037	0.32	12.0	2.0	1	23	526	549	526	549	0.94
15	17	0.00056	0.05	14.6	2.2	2	23	556	578	555	578	0.95
16	17	0.0086	0.76	10.9	1.8	1	23	584	606	584	606	0.94
17	17	0.00027	0.023	15.6	0.7	1	23	612	635	612	635	0.94

Sequence Information

Coding Sequence: ATGAAAGACTGTGATATACTCAAAGAGCACGCCGCGAAGCATGCGTCCATCAACCTGGAGACGTTCATACCTCAGAGAGTAATATCGAAGGACGTACCGGTGAAAATAGATGTTACGGAAGTCGCATGTAAGATATGTAATACGAAAGTCAACGATATAGACGGATTGGTTGCACACATCGTCTCTGAACACAACGAGGAGTATGACAGATCCGCAGGTCCATGCGTTTTTCCATTCATCCTCGACAAAACCCTGATGCAATGCGTTCTATGTGATGGGAAGTATGACAACTTCTCTTGCATGCTCGTTCACATGTTTAAAAATCACATAGAGCACAGGTACATCTGCCAGGTGTGCGGACTCGGCTTTATCGATCAGGTCAGACTCAAGAGGCACATCAGTAACTGTCACATAGGACATAGGTGCACGATCTGCGGGAAGGTGTTCGACGCGTTCCACAAAATGGACAAACACAAACAAAGGATCCACGGACAAGTTCGAACGCACGAATGCAATTTGTGCAGCAGTACCTTCGAGAGCTTGTATCAGATGAAAGTGCACATGGGCAAAGTGCATAACGTTGAGAAGTATCAGATAAAATGTGAGTACTGTCCGAAAGTTTGTACAACGAAAGGTGCAATGCTGCTGCACCATCAGTCGCTGCATTCGACGCCGAAGTACGAATGCGACGTCTGCGACTACAAAACCGGCATCAAGTGGATGATTAAACTGCACCAACGGAAGCACTGCGGCGAGAAGAACTACGAGTGCAGTATCTGTGGGAGGCGGTTCGGCAGATCCAGTAACCTTAGAGCGCATATGAAAGTGCACACTGGAGAACCTAGAGGTGGCCAGAAAGCTGCAAAACAGCCGAGTGTCAGTATTGAGACGTCTACTCACGGGGACATTGATACGGCACCCATTACTCCACAGCCCAAAGTGACCCTAACTTCAAAAGGCAGACTGAAGATAATGAGGAATAACGTCCTCCAGGTGCTACTGAAATCGACCGTGATGCCGTTCCGATGGCTAAAGAGTTCCTACAGATGTTTCTATTGTTACGACATATTTCAAGAATCTTCGGACTTGAAGAACCATCAGCAAGTTCACGTTGGCGATGCAGTTAAAGAGCAAGCAATGAACAACTATTGGGAGCAAGTCGTGTACGTAGACATTTCCAATATGGCGTGTAAACTATGCCAGGAAAATATCACCGATTTATATGATCTGATAGATCATTTGATGGAAAAACACGGTGTCGGTTACAATAAAGACATTGGAGTTTGCATGGTGGCGTTTAAGCTCGACAACTTTGTGGTGAACTGCCTCGCTTGCGGCGCCAGCTTCTACACTTTCGGTCCCCTCTTACACCACACGAATAAAGACCATAAGGGTATATCGGCAATCCTCTGCGAGGTCTGCGGTCAGAATTTCAAAGATGCGAATCTGTTAAGATTGCACATGAAGTCAGTGCACGAAAACAATGGCGTCCTTTGCCCCGAGTGCGGGGTGAAGTTCGAGACCAGATCGAAACTGAAAACTCATCAAAAGAACCAGCATGATTTGGACAAGAAATACAAGTGCACGATATGCCCTCAAATGTTTCAGAGCCACTACAAGAGATCCAGGCATATGGCGGCGGAGCACAAGAACAGGCAGGAAGTGAAGTGCCTGCACTGTCCGAAGACGTTCGTGTTCCGTAGTATGATGATGACGCACTTGCGTGACACACACTTGAAGGTCAGGAACCACGTGTGCAGCGTGTGCGGGTGGAAAGCATTCAACAGCAATCGATTAAAGAACCACATGTATAAACACAGCGGGGAAAAGAACTTCAAGTGTGATGGCTGCGACAAGGCCTTCACGACGAAGAAGATCATGAGGGCACATTACGCGCGAATGCACAAACCCCAGCAGCAGCAGATGGTGTTTGACAATCACTACGCTGGACATCAGTAA
Protein Sequence: MKDCDILKEHAAKHASINLETFIPQRVISKDVPVKIDVTEVACKICNTKVNDIDGLVAHIVSEHNEEYDRSAGPCVFPFILDKTLMQCVLCDGKYDNFSCMLVHMFKNHIEHRYICQVCGLGFIDQVRLKRHISNCHIGHRCTICGKVFDAFHKMDKHKQRIHGQVRTHECNLCSSTFESLYQMKVHMGKVHNVEKYQIKCEYCPKVCTTKGAMLLHHQSLHSTPKYECDVCDYKTGIKWMIKLHQRKHCGEKNYECSICGRRFGRSSNLRAHMKVHTGEPRGGQKAAKQPSVSIETSTHGDIDTAPITPQPKVTLTSKGRLKIMRNNVLQVLLKSTVMPFRWLKSSYRCFYCYDIFQESSDLKNHQQVHVGDAVKEQAMNNYWEQVVYVDISNMACKLCQENITDLYDLIDHLMEKHGVGYNKDIGVCMVAFKLDNFVVNCLACGASFYTFGPLLHHTNKDHKGISAILCEVCGQNFKDANLLRLHMKSVHENNGVLCPECGVKFETRSKLKTHQKNQHDLDKKYKCTICPQMFQSHYKRSRHMAAEHKNRQEVKCLHCPKTFVFRSMMMTHLRDTHLKVRNHVCSVCGWKAFNSNRLKNHMYKHSGEKNFKCDGCDKAFTTKKIMRAHYARMHKPQQQQMVFDNHYAGHQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01496749;
90% Identity: iTF_01496749;
80% Identity: -