Tobl023319.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000453.1:518595-523408[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.82 72 4.7 2.3 1 23 17 40 17 40 0.92 2 24 0.004 0.35 11.9 6.5 1 23 44 67 44 67 0.97 3 24 0.00015 0.013 16.4 0.5 2 23 74 95 73 95 0.96 4 24 6.3e-06 0.00055 20.8 2.8 1 23 101 123 101 123 0.97 5 24 0.0075 0.66 11.1 1.8 1 23 180 202 180 202 0.98 6 24 2.8 2.5e+02 3.0 0.0 3 23 231 252 229 252 0.84 7 24 4.3 3.8e+02 2.4 0.5 8 23 259 275 258 275 0.92 8 24 0.22 19 6.4 0.5 2 19 281 298 280 301 0.93 9 24 0.00037 0.033 15.2 4.1 3 23 387 407 385 407 0.97 10 24 0.014 1.2 10.2 0.1 2 23 435 457 434 458 0.94 11 24 0.57 50 5.2 0.5 1 23 477 500 477 500 0.92 12 24 7.1e-05 0.0063 17.4 3.5 1 23 505 528 505 528 0.97 13 24 8.7e-05 0.0077 17.2 2.9 1 23 533 556 533 556 0.95 14 24 0.0088 0.77 10.9 2.1 2 20 559 577 559 581 0.94 15 24 0.0038 0.33 12.0 1.6 2 22 588 608 588 608 0.95 16 24 0.14 12 7.1 4.2 1 23 664 687 664 687 0.95 17 24 0.73 64 4.8 0.1 2 23 715 737 714 737 0.92 18 24 2.5 2.2e+02 3.1 0.1 3 23 761 783 759 783 0.92 19 24 8e-05 0.007 17.3 0.6 3 23 790 811 789 811 0.94 20 24 0.0094 0.82 10.8 4.5 2 23 816 838 815 838 0.93 21 24 0.0023 0.2 12.7 2.5 1 23 843 866 843 866 0.97 22 24 3.9e-05 0.0034 18.3 5.5 1 23 870 893 870 893 0.97 23 24 0.00068 0.06 14.4 0.3 2 23 900 921 899 921 0.96 24 24 7.1e-05 0.0062 17.4 1.1 1 23 927 949 927 949 0.97
Sequence Information
- Coding Sequence
- ATGATCAAACTGAGGAGTCATAAGGCGAGGTTCCACGGCTCGAAGGAGTTCTCGTGTTCGCATTGTAATGAGAATTTTTTAACAGATTACGGAAAACAGAGGCATTTACTGATGATGCACGGATTAGGTCACAAATGCACGCATTGCGATAAGATGTTTGTTAAAGATTCGTTCATGAGGAATCACGTCAGGAGGACACACCTATCGGAGCGCGAGGTCGAATGTGCGGTGTGTAAAAGGAAGTTCTTCGATAAAGAGCAACTAAAAGTTCACATGGTGAAACATTGCGGTTCTAGGGACTTCCATTGCGACGTATGCGGAAAAGGATTCTATCGGAAGAAGAACCTACGAGTACATCTAACTTCGCATAAGTTTTTAGGGTACATTATTGGAAATTTCTTGCAAATACAAATTGGAAATTTCTTTCCAGATAATAAAAGACTTGCAGTAATGCCAAGTGCTAATAAAAAGAGGAGAGGGAACCTTTTGACGCTATTCAACAACACGACGTTGATACCGTTTAAATGGCGGGGAAAATACATGTGCTTTTACTGTGGTGATGATTTCGCTGATTGCAATCTCTTGAGGGAACATACTAGGTCCCATGGCGCGGTCTCCGAAGCGGACCGAGCGATCAGACTAGTTAAATCTGGTGATTCTGAAGTCAAAATAGATGTATCGGATATTGCTTGTGAATTGTGCGAAGAGACTTTCGATAGTTTTGATGTTATCGTTGATCATTTATCAGTAAAACATAGATTGAACTACGATAGAGAGTCTTTCACTACTGCGAACAAAAGGTTGAAGCATATGAAGATGGATCATGACTTAGGCGGACTGCAATGCGGTTACTGTTTTAAAGTTATGACGACGAAGCAGAGTTTTCTTCGGCACGCTTCCTTTTGCACACAACATATCGATTGCATTAAAACTAACGGTTTAGTAGAAGCAGACGAAAGAAAACCTTCAGTGAAAAGGATTAGAAGTGATTTGGCTTGCCTCCTCAACATGTCCACGGCTATCCCATTTAAACACTATCTCAATGAAACAAAGCAAGCCACGTGCGAGACCTTTACCTCCGAGAAGAGGAGGAGAAACTTGCAAATTCTATTCAACAACACAACAATTTTGCCATTCAAATGGCGTGGGAGATGTCTCTGTTTCTATTGCGGAAAGAGCTATGCACAGTATAACGACTTTAGAAAACACACGCGATCCCACGGTCCGTGCACAACAAAAGATTACGCATTGAAAGTGATTAAAGGAAATCACATCGAGATAAAAATCGATGTGTCAGAGATCTCGTGCGAGATCTGCAACGAACCATTCGCCACATTCGATGAAATAATAAGTCATTTAATCGTGAAACACCACATGGAATACGATAAATCTGTAAACACGCCGTTCCAAGAATACAGACTGGTGGATTTCCGTTGTATTTTTTGCGAAGAGCAATTTACTTACTTCGGATATTTGGTCAATCACGTAAATAATGTACACCCTCAAAACAATTACCGCTGCAAAGATTGCGGCACGTTCTTTAATAAAAAGAGAGATCTAGCATTGCACTTACGGCATAACCATCGCGAAGGTGGATACCCTTGCTCCGAGTGTTCTCAAACTTTCAAATCTCACAGTTTACTGCGTAGCCATCAGAACGATTTTCACTTCAGAAAATGTAAATGGTGCGGACTAAACTTTGCTTCCTATAGTCTCCTACTAAAGCACACGCAATGCGACCACCCGGACGACGGCAGCGCCAAATGCCCGCATTGTTCCAAACAGTTAAACTCTTCGCAAGGTTTAAAGCAGCATATGAACAAATGTAAGGTTAACATGTTAGTTAAAATAGAACATCCTGTCGATGACAACTTCTCCGAAGACAATTTGCTGCAACCGAAGAAGAAACAGAATATACTGCAAATACGTCAGAATATCCAAAGTGTTCTCAACATGTCAACTGCGTTGCCTTTCAAGTTTTTCGCGAAATTTTGTTGCTTCTATTGCCCTAAGAAGTGTGTCGAATTTGACGAGCTCAAGGAGCACACTATTTCAGACCATCCGGTATGCGATTTGAATTCGAAAAGCATGAAGAAATGCAAAGGCGAAAGGATAACGGTAAAAGTCGACATAACGGATTTGAGATGTAAACTTTGCGGTCGACAAATGGAAACTTTGGACGTATTGATAGAACATCTTATATCCAAACATGAAGCGGCCTATGATAAATCTGTAACTGGATGTCTAGAACCATACAAAATGGTGAAAGACAATATAGCGTGCCCATTTTGCCCAAATCGCGTGTTTAGATATTTTGGCATCCTATTGAGGCACATAAACTCCgaacatagtaataataacagAATTTGCGATTTCTGTGGTCGCAGTTTTAAGAGCGTGACTAATTTGAAGGTCCACATCACGTACACGCACACAGGTGCGTGCGAGTGTGACGTGTGCGGAACTAAATACAAGAACCAGTGGTGCCTGAGCCGGCACAAAGCGAAGAGCCACAATGCCAAGGACTACAAATGCCCTAAGTGCCCGGAGCTGTTCCAATCTCAATACCATAAGCAGAAACATCTGATCAAGGTCCACGACATCGGCCATAAATGTACGTACTGCGAGAAAATGTTTACCAGGAACTCGTTTATGAAGGATCATATACGGAGAACGcatttgaaagagaagaatgtggTGTGTTCGGTCTGTAGTGAGAGATTCTTCGATAACTACTTGTTGAGAATGCACATGGTTAAACATGAGGGCCAGAGGAAGTTCAACTGTGAGGTATGCGGGAAAACGTTTCTTAGGCGAAGTAATTTGAGTTCGCATAAGGAAATGCATAAAAAGTATGGACATTTACAGTCCCAAGTATAA
- Protein Sequence
- MIKLRSHKARFHGSKEFSCSHCNENFLTDYGKQRHLLMMHGLGHKCTHCDKMFVKDSFMRNHVRRTHLSEREVECAVCKRKFFDKEQLKVHMVKHCGSRDFHCDVCGKGFYRKKNLRVHLTSHKFLGYIIGNFLQIQIGNFFPDNKRLAVMPSANKKRRGNLLTLFNNTTLIPFKWRGKYMCFYCGDDFADCNLLREHTRSHGAVSEADRAIRLVKSGDSEVKIDVSDIACELCEETFDSFDVIVDHLSVKHRLNYDRESFTTANKRLKHMKMDHDLGGLQCGYCFKVMTTKQSFLRHASFCTQHIDCIKTNGLVEADERKPSVKRIRSDLACLLNMSTAIPFKHYLNETKQATCETFTSEKRRRNLQILFNNTTILPFKWRGRCLCFYCGKSYAQYNDFRKHTRSHGPCTTKDYALKVIKGNHIEIKIDVSEISCEICNEPFATFDEIISHLIVKHHMEYDKSVNTPFQEYRLVDFRCIFCEEQFTYFGYLVNHVNNVHPQNNYRCKDCGTFFNKKRDLALHLRHNHREGGYPCSECSQTFKSHSLLRSHQNDFHFRKCKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNKCKVNMLVKIEHPVDDNFSEDNLLQPKKKQNILQIRQNIQSVLNMSTALPFKFFAKFCCFYCPKKCVEFDELKEHTISDHPVCDLNSKSMKKCKGERITVKVDITDLRCKLCGRQMETLDVLIEHLISKHEAAYDKSVTGCLEPYKMVKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKSHNAKDYKCPKCPELFQSQYHKQKHLIKVHDIGHKCTYCEKMFTRNSFMKDHIRRTHLKEKNVVCSVCSERFFDNYLLRMHMVKHEGQRKFNCEVCGKTFLRRSNLSSHKEMHKKYGHLQSQV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -