Tobl003715.1
Basic Information
- Insect
- Troides oblongomaculatus
- Gene Symbol
- -
- Assembly
- GCA_029032895.1
- Location
- JARDWC010000100.1:236036-245292[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-09 3.2e-06 27.3 0.0 8 40 39 69 38 74 0.87 2 2 6.3 6.9e+03 -2.6 0.1 16 21 146 151 146 151 0.90
Sequence Information
- Coding Sequence
- ATGCCCCGGCACAGTCCGCCAGTCCAAATGATCAGGCGCCGCCGGTTGTGGGTAATGAATTACCGAGCCGTTGCTTGCTTGCTAAATCTGAACGGCGCGCGTCGTGCCCCTAATGCTTTGAAAGCTGTTGACACTGGTATTTCACTGAGAAAAGCTGCTGCAGTGTACGGAGTTCCCATAGCTACACTCTCTAGAAAAAAAGGGAACCCTGAAATATCCAAACAAAAAACTGGACCAGCAACTGTTTTTTCTGATACcgaaaaacaaaaaatagttgACTGGATTCTTTTTAGAGCTCAGCGTGGTTTACCAGTAACTAAAACAGAGCTCTTGGATTCTATTCAACAATATGTGAAAAAGTCAAAAAAAGAAACTCCGTTTATTTATAGTCGGCCGAGCCGACATTGGTATGAGGGCTTTCGAAAACGACACCCTCAAATGTCAATCAGGAAGCCAACAACATCTGACTCATAG
- Protein Sequence
- MPRHSPPVQMIRRRRLWVMNYRAVACLLNLNGARRAPNALKAVDTGISLRKAAAVYGVPIATLSRKKGNPEISKQKTGPATVFSDTEKQKIVDWILFRAQRGLPVTKTELLDSIQQYVKKSKKETPFIYSRPSRHWYEGFRKRHPQMSIRKPTTSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -