Thel011621.1
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000015.1:9501490-9509992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.087 8.2 7.7 0.1 2 21 1461 1480 1460 1481 0.87 2 7 1.8e-05 0.0017 19.3 0.7 2 23 1569 1590 1568 1590 0.94 3 7 0.011 1 10.6 6.4 1 23 1609 1631 1609 1631 0.97 4 7 0.0043 0.4 11.8 4.2 1 23 1671 1693 1671 1693 0.98 5 7 0.00092 0.087 13.9 2.7 1 23 1713 1735 1713 1735 0.94 6 7 0.016 1.5 10.0 0.5 1 20 1759 1778 1759 1780 0.94 7 7 0.11 11 7.4 1.1 5 23 2155 2174 2152 2174 0.90
Sequence Information
- Coding Sequence
- ATGGATAGGTTGAATCAGTTAAGGGGCGAAGCGGGTGGGTCGGGAGATTCCTCTTTAGATGCGACCTCTGCGCCAAGTGATGCATATTTAACCGCGACTGACAGTTCCAAGTATTTTTCTCTTTTAGAAGACGAATctagttttaatatttccaaaGATGCTGTTATCCCAGAACAAGAGGCGTCAGTCGCTGATAGTCCAATAATATCTGATTTATCTCCTATACCTAAAAAAAGTGATTTAGATAGCTACAAGATTGGTGAACAAATCGAGGCAGCAAATATATTATCGGGTGGTGTTAACATttttgatgataatgaaaactcATATGATGGTGATGAGTTGGTCATTGATGATAATGCTACTGTAGCGGATGAGAAAACAAGATCGGAGAGTAAACTCATTGATGATGTTGAGTACAGTAAAGTCGATAGTAATTTAGCAGGAACAGTTGAAGATGCGGATCCAGTTATACCAAGCAAAGACACAGAAGTTGTTCTGCAGATTGATGGGAAGAATGTGGATGCTATTGATATTGGTAATGGATTATACTTGTACAGGAAAGATGGAGAGGAAGAACTCGCAGCTGTTCAAATAATAGATGATGATCAGCAACAGCCCAGCTTTAAATTCCTTAAAGTGCGcgAGAACTCGGAAGGCAATTTAGAGGTTTATGAAGAAATTGAAATTGAAGTACCCAAAGAAGTGcCCATTAAAGAAGTAAAGCCTGTAGAACATGTGTCTCCATTTATAATGCAGAATGTTGACAAAAATTTTGATGAAACAAGTAAAGTAGAGAAAAGAGTATCAACTATACAAAAAGATGCACCATCCAGTGAAACAAAAACAATGGATTTTAATAAAGAACTGCAATCTGAATCAAAGACAGAAGTTAATTTAAATGGAAAGATGATCAAATTTAGTGAATCTCGAAAATCTCCTGTAGTAGGTAGTTTTACTCCAATGACTTTTCATTCAACTCCAAATAAAGAAGGCATTCCATTGACAAAGACTATGGTTGATCAACACTTGCATCCAAGCAGGTATTCAGATAATGCTAAAAAAACAATAGAAGTTCATACCGATAGCTCTAAGCAAAGAATTTTGGATACACCTGTTAAAAATCATAAGGAAGTTTTAGAAATAAAAGCGGAATTAGCTGAAAAGGAATGTAAACAACCATTGGTTGAAATAGAAGATAGGCAGAAATATACACAGCAAAAAGTGTCAGATGTCCAAGAAAGTATGAATGTAAAAATTGCAAATTGTGGAAAAGTTGAAGATGATATCAAAAGTTCTACagaaattgttaatattgttcATGTTTCTGATACTGTTACGAATGCAGAGGTAATCTTTAACAAAACTGCAGAAAATGCTATCAATAAAACTAAGTGTTTtaaagatgataataatataaatctaccTGTAACTGATTATGAATTGCAAACTGAGGCTACAGAAAATAAGAAGTTATTAGAAAGCAGTAAAGttgttgataatattattaatgtacaaGAAGTTATTCCAAATGAAGTTGTATCTTCTAAAATTGACTTAAATGAAGAAAAAGTTATTGAAGAACTTGGAGATACTCCTGTAGCATCGACAAAAGAAGAAGCACCAACTGTCGTATCCGATTTAAAGGATAACGAGAAAAAAGATAGTGTAGTTATTCCAAATGAATCTGAagggacaaaaaaaaatatgttaaatagtaGTAACGAAATACTTAGtactatagataataaaaaaaatacttgtgaaCCAAAAACAGAATTGTTAAATAATGAACCTGTAGAGGTTGTAAGTGATAAATTAACACCAGATGAACAAAAAGAATTGCAGAGTAACATATTGAACAGTGAGATTGATGTAGATCAGCATCAAGATAATTTACAAACCAAAGAAGTAATAAAACTGTCGAATAAAGAATGTGTTGACTTAGATgcaaatttaaatacttataatcaGGGAAATGTGATACCAACAGATGAGGCATTGAAAACTAACTTAATAGAAAATAGATTGAccaaaaatcataataaagatGATGATTGTAGTAAAGTACATGAACCTATGAAAGTGTCTACTAAAGAAACTAACATTGAATCTAAGGTTTGTACAGTTTCcattaaagaaaatgaaaaagtaGACCAGTTACTACTTATGAATAAAACTCAATCAGATACTAAAAAAGAAGAGACAATGTCGAAGATTAACAATGacactaatattaaaaatgtttgtgtgAATCCTGCGAATAATAACAACACAGCAGTACCCTTTGGTAAATGGACTGAAGCTAATAGAcaagaatttttaaataaaataaaagaagcgAAAGTTCCATCTAATATATCTAATACAAAGCAGATTAAACAACCAAATGATTTGAATAGAAGAgacattttacaaaaaattgATAGTCAGAGACAACAACAATCGAATAATTCAATTTCTAAAGTTCAGGAAAAACAAAAGTCAAATTCAAAGGTGGAACCTTCCGCATTTGTAAAGTCTGCAGTCAAACACGATACAAAAATACCTGTCAAAGAACGGCCAGCGTCGAAATCGAAACCAAtatgtattaagaaaaatatgaatGAGACCTCTAAGAATCCTATTAAACTTCCCGATGTTACAATTCCGAATGTAAATAAGAAGGAATCATTACAaagaagagaaataaataatcaaGATCTAATTGACAAAACTATTGAAGGCATTATAAACAGAGTTCCCCATGTCGTTAAAACATCAAAGGAAGAATGTAGGCAAAAAGTACAAAATACTGAAGGTATAGAAAAGCAAAAGGGAATGACCTTATTTGGCCCTTCGTATCACGCTAAAAATGAACAGTCGGTTACTTTAGATGAgattgaaatgaaaatgaacgAGTTACATGGAATTCCATTCGTAGAAAGACCAGCACATGAACTACCACAGAAATTTACCGTAGACACTCTTCAATTAAAAACTGAAAGTTACAAAAATACATCATGTCAAAGTAAAATATCAACACCTAATCAATTGTCAATAGTCCTACAACAAACCTCTCAACAAGAAACAATGTCTGAAGTAGTTGTTAGTATTGATTCAGATGAAGAGATTATTGAACATGAACCAATAACTGGTGATATTAATCCAAAAAAGAAATCAACAGAGATGCTAGAAAACGCTCAAGTCTTAGATATTAGTCAAATGCAAAAAGTGAATGAACCACGTAAGAAAGATgtaataataacagaaaaagACTTCGATAAATTCTTCAGAAGGAACTCTGTTACATATGAAAATTGTTTAACTGTTAATTTCGACGGCAAGGAACCGCATAATGTTGTTCAAACCGTCGTTGAAAAGGATGTGGCACCTAAAAAATTAACTCGTAATGAAGTACTATTAGCCGAGTCCAAAGCAAAATCAACGCACAAACTGCAAATGTTACAAGCGCGACACAATAATAATGCATCAAAAATACCAACTACAGCTAAGAATCAAATGTCAGAAGATGAAAGCTACGGAAAGAACTATCaatcaaaattacaaattgCGTACCAGTCTGCTTTGACTGCTAAGCGACAAAAAGAAAGccctattataataattgaagaGAAGCCCGTGAAAGTAGTTTTCATGGAATCTAGTAGTGGCTTTATACCTTCTCAGCTTAATGTGCAAGGTGAAAAGTTATCTCCTGTTAAACAATTCACCTCAGACCTCGAAACATTCACCCACAGTACAACAGATTCTTTAGACTCTGATATTTTAGATAACTACGACAATAAATCCCATGATGAAGCAAAAGCTAAAACTAAACATCAGAGAAAACAAGTGTTAACTCCTGTAGAAACAGCTGATATGGAACTCATTGAACCGAATGATCTGGGAATTGATATTTCaccaaagaaaaaaagaaaaattgaagAGAAGCCAGAAAAAAGTTATAGAAATCATGTACCAAAGAAATCTTACCTTCTGGGGCGTACCAATtttgatgaaaaaattaaagcCCAGGATGTCGATAAAGCTTCTATTAAAGAAATCACTAATCATAATTCTTTTGTAGGACATTCAAACCCTATATCAGCGATTGATAACTTGGTTAAAGCGGCAGAACTGTTAGAGACCCAAGCTGAAAGTAATATTAACTCCACTAAAACAGAACAAAACACGCCGGTTAAAAGGGGCCGTGGGCGACCAAGAAAGTATCCCCTTCCAGATGCTgaagcaaataaaataaaagcgcCTAGTCCACAAAAGAAACCCCGATTAATAGATGCCAAAGTAATCAAACGCGAGGAAACCGACGAAGACGACACTAGTGATGgcgaaataattaaagaaaattggACAATGGGTAAAATTAACGAAAATATTGTGTGTCCTATATGTGGTAAACTATTCCGTTCTGAAAATGTCGTATTTAAACATGTTAAACATTGTACAGGTCCGTCGCCAAATCGTTCCGAATCCGACAAAAGAAGATTACGCGAGTCCAGGGACTCGGATCAATCTATATTAGATCTAGAAGAGAATGAAGTCAAAAAGAAAAGGAAGTCTAAAGAGAGCGTTTCCAAAAGTTCTACTCATTCCGACGAAGTGGTTGTAATTGAAGAAACGCCGCTAACTGAGAAATCTTCTAAACAACACATATCTAGGAAATCTATGGCCAAGCCTAAACTTATTAACAAACATAACTTAGTATGTGAAATTTGTGGAAAAATATTTAGACAATCGTCGTATTTAGCTCATCATAAATTACTACACAAAAATGACGATTTAAGAAAACATGACAAAGAAACAAATGATAAAAAGTCAATTTTCAGTTGTGAAGTCTGTAAAAAGGAATTCAGGAAGTTGCATCATTTAGTCCATCATAAGATTATTCATAATCCAGATCCTGTACCATCGAGGACGCTCCGGAAGAGTTCATTAGAACAGGCCGATGGCAGTAAAGTTGTTAAAGAGCAGACCGGCGTCAAACAAAACGAAGACCAGAGTGCTGGTTTCCGCTGCGAGCCCTGCGACAAGTCATTTAGAAAACTCCATCATCTCGTCGAACATAGAGAGACGCACGACGGAATAAATAGACAAAAAGCAACAGAGGTAGAAACTGTCAAGCCAGTGCCGATGCATCGATGTGATATTTgtgataaaacatttaaaaaattacagctTCTAAACGAACATAAGGACCAACATTTAGAAACGTGTTCAGAAAAATCTGATGACAAAAGCGTTAAAAGCTGTTTATCAACTAAAGATATAATACACGAGTGTTCATTGTGTTACATGGTTTTTCCTAACGAGCATTCCCTGAATAAACACACAGTTATTTGTCTGAGGAAAAAGAAACAGTCTGCTGCAAAAGCCAAACAAGCCGCTCTGAAAAAAGAATCAGAAGGCAATGAGGTCAATTCAGAACATCATAAATCAGAAGAAAGTGACCCTAACGATAAAGATGAAGATTCACTAATAATCATTGAAGACCATGATATCCAGGATGTTATTGTCCCCAAAAAAACTGAATTGAGCAACGATAAACCTGCAGAAGACTTGTTAAGTATGACTATACCTAACAAATCAGATCCGATCATACCAATCAATAGCACCGAAATTACACTCACAGAACAAAAAGAAGCAAACATTGTTGAATCTATTAAAGAAGAGTCGTCGGATTTGACGACAGTGCCTAAAGAAAATCTGCCAGTAAAAGCTGTAACAGAAATcagaattaataaagaaattaacattCCGGCAGAGACACAATCACAAACAAAGCAGAGAGAAGAACAGGTCACCCAAAAAATTCCCCATAAACAAATTCATAAGAAAAGAACTCCTGCTAAAGATAAATTAACAGCGACTGTAACAAAGCGGCAAAAAACGGTGGATTTGCCGCTTCCAGTCACGGAAGAGATGAAGCTTTTCGCAGAATccagcgatgatgatgatgtaaggtATATGCTGAACCCCGATTTCAAAGAGAACGAACAGCAGCTAGAAGCGAAGAATTTCATGAATGTAAAAGCCAAAAAGCGTAATTCGCTTCAAATCGAATGGCCCAAATCGAAAGATTTACTAAAAAGAAGAATTTCTTTACAAAATCCGCCTAAAACATCCCGTTTGAAGAGTAAGTTATTAGAACAAAAACCGGTCCCGGCGACGTCCGCCAAACCAGCTATACCTAAAATTGAAAAGCAAGTTCCAGCTGAACCAGTGGATTGCACTGATTCAGAGGACAGTGAAACCAAATATGCTTTCCCCGAAACTATTAAGCAGAACACGGCCAACGCTCCTAAAGTAGAGAAGAGGAAACCGCTCGAGTTAAAGCGGAAGTCGTTAAGTGGAATTGCAAAGAGAAAATCCTTGGGAAAAGCGATGAAATCCAAACACAAAGCCCATCCAACGCAGGCGAAGCCAATAAAAAGACGCACAATGGAAGTGGAGCATAGGTGCGATTGCGGCAAGTTGTTCAGCAGCGCGGCGCTGCTGTCGCGGCACACCACGTTGGACCACACGCCGCCCAGGATCCGCCGCCGGCGCTCGCTCGCGCCGGTGGCCGACGAAAAATCCGTCACGAAGCTCGACAACAAACCCGCCCCTCAGACGGCTAGACGCGGTGCCGGCGCTGCGAAGACAAGAGCGAGCGAGCGCGAGAGCGCCACCGCAGGCAAGTCCGGAGTAGCGACCCGGAACTCCAGCATGAGCATCAAGGCCGCACACCGTGGCGTGCCCGTGCCGGAGAGGCTGAGGAAAGCAATGGAGAAATCAAAGATTTGA
- Protein Sequence
- MDRLNQLRGEAGGSGDSSLDATSAPSDAYLTATDSSKYFSLLEDESSFNISKDAVIPEQEASVADSPIISDLSPIPKKSDLDSYKIGEQIEAANILSGGVNIFDDNENSYDGDELVIDDNATVADEKTRSESKLIDDVEYSKVDSNLAGTVEDADPVIPSKDTEVVLQIDGKNVDAIDIGNGLYLYRKDGEEELAAVQIIDDDQQQPSFKFLKVRENSEGNLEVYEEIEIEVPKEVPIKEVKPVEHVSPFIMQNVDKNFDETSKVEKRVSTIQKDAPSSETKTMDFNKELQSESKTEVNLNGKMIKFSESRKSPVVGSFTPMTFHSTPNKEGIPLTKTMVDQHLHPSRYSDNAKKTIEVHTDSSKQRILDTPVKNHKEVLEIKAELAEKECKQPLVEIEDRQKYTQQKVSDVQESMNVKIANCGKVEDDIKSSTEIVNIVHVSDTVTNAEVIFNKTAENAINKTKCFKDDNNINLPVTDYELQTEATENKKLLESSKVVDNIINVQEVIPNEVVSSKIDLNEEKVIEELGDTPVASTKEEAPTVVSDLKDNEKKDSVVIPNESEGTKKNMLNSSNEILSTIDNKKNTCEPKTELLNNEPVEVVSDKLTPDEQKELQSNILNSEIDVDQHQDNLQTKEVIKLSNKECVDLDANLNTYNQGNVIPTDEALKTNLIENRLTKNHNKDDDCSKVHEPMKVSTKETNIESKVCTVSIKENEKVDQLLLMNKTQSDTKKEETMSKINNDTNIKNVCVNPANNNNTAVPFGKWTEANRQEFLNKIKEAKVPSNISNTKQIKQPNDLNRRDILQKIDSQRQQQSNNSISKVQEKQKSNSKVEPSAFVKSAVKHDTKIPVKERPASKSKPICIKKNMNETSKNPIKLPDVTIPNVNKKESLQRREINNQDLIDKTIEGIINRVPHVVKTSKEECRQKVQNTEGIEKQKGMTLFGPSYHAKNEQSVTLDEIEMKMNELHGIPFVERPAHELPQKFTVDTLQLKTESYKNTSCQSKISTPNQLSIVLQQTSQQETMSEVVVSIDSDEEIIEHEPITGDINPKKKSTEMLENAQVLDISQMQKVNEPRKKDVIITEKDFDKFFRRNSVTYENCLTVNFDGKEPHNVVQTVVEKDVAPKKLTRNEVLLAESKAKSTHKLQMLQARHNNNASKIPTTAKNQMSEDESYGKNYQSKLQIAYQSALTAKRQKESPIIIIEEKPVKVVFMESSSGFIPSQLNVQGEKLSPVKQFTSDLETFTHSTTDSLDSDILDNYDNKSHDEAKAKTKHQRKQVLTPVETADMELIEPNDLGIDISPKKKRKIEEKPEKSYRNHVPKKSYLLGRTNFDEKIKAQDVDKASIKEITNHNSFVGHSNPISAIDNLVKAAELLETQAESNINSTKTEQNTPVKRGRGRPRKYPLPDAEANKIKAPSPQKKPRLIDAKVIKREETDEDDTSDGEIIKENWTMGKINENIVCPICGKLFRSENVVFKHVKHCTGPSPNRSESDKRRLRESRDSDQSILDLEENEVKKKRKSKESVSKSSTHSDEVVVIEETPLTEKSSKQHISRKSMAKPKLINKHNLVCEICGKIFRQSSYLAHHKLLHKNDDLRKHDKETNDKKSIFSCEVCKKEFRKLHHLVHHKIIHNPDPVPSRTLRKSSLEQADGSKVVKEQTGVKQNEDQSAGFRCEPCDKSFRKLHHLVEHRETHDGINRQKATEVETVKPVPMHRCDICDKTFKKLQLLNEHKDQHLETCSEKSDDKSVKSCLSTKDIIHECSLCYMVFPNEHSLNKHTVICLRKKKQSAAKAKQAALKKESEGNEVNSEHHKSEESDPNDKDEDSLIIIEDHDIQDVIVPKKTELSNDKPAEDLLSMTIPNKSDPIIPINSTEITLTEQKEANIVESIKEESSDLTTVPKENLPVKAVTEIRINKEINIPAETQSQTKQREEQVTQKIPHKQIHKKRTPAKDKLTATVTKRQKTVDLPLPVTEEMKLFAESSDDDDVRYMLNPDFKENEQQLEAKNFMNVKAKKRNSLQIEWPKSKDLLKRRISLQNPPKTSRLKSKLLEQKPVPATSAKPAIPKIEKQVPAEPVDCTDSEDSETKYAFPETIKQNTANAPKVEKRKPLELKRKSLSGIAKRKSLGKAMKSKHKAHPTQAKPIKRRTMEVEHRCDCGKLFSSAALLSRHTTLDHTPPRIRRRRSLAPVADEKSVTKLDNKPAPQTARRGAGAAKTRASERESATAGKSGVATRNSSMSIKAAHRGVPVPERLRKAMEKSKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01116024;
- 90% Identity
- iTF_01494664;
- 80% Identity
- -