Thel020183.1
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000033.1:3704910-3711215[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 3e-05 0.0029 18.6 0.9 2 21 169 188 168 189 0.94 2 10 0.01 0.99 10.6 0.4 1 23 222 245 222 245 0.97 3 10 8.3e-06 0.00078 20.4 1.4 2 23 251 272 250 272 0.95 4 10 0.02 1.9 9.7 2.8 2 21 276 295 275 296 0.93 5 10 0.006 0.56 11.4 1.1 2 23 336 358 335 358 0.94 6 10 1.9 1.8e+02 3.5 0.3 3 23 366 385 365 385 0.88 7 10 0.00094 0.089 13.9 1.2 1 23 391 413 391 413 0.98 8 10 0.00068 0.065 14.3 0.7 1 23 419 442 419 442 0.97 9 10 0.0063 0.6 11.3 0.4 1 23 451 474 451 474 0.93 10 10 0.0001 0.0096 16.9 3.8 1 23 483 505 483 505 0.98
Sequence Information
- Coding Sequence
- ATGAGCCGGCAAATAGACATAAAAGCTTTGGTTTCGCACGTAGTGCGCGGTGACGGCATAAATAAATGTAGAATATGTATGGGTGATACCACGGAAGGTCAGGTGTTTCTCGGCGACACCGTAATGATGGACGGAGATCAACCGGTGACCTTATCAGAGCTATTGGAAACTATAACAGGAGTTGAGATGCCGATGAGCGAGGACCTGCCATACAGCCTGTGCTCAGCTTGCTCGCTCTGTGCCCTAAGAGCAGGCCAATTCCGGACGATCTGCAGACAGGCGGCCCACAAGTGGGACTCCATGTTGCAACTACTAAGCACTATACCCGAAGTCGTGAACAAAACCAAAACTTTATTCGCAATCGTCGAGATGGATCAGATGATTCTGTTCGATGATTGCGATGATTTACCCAACGCGAAATTAGCCGCCGATAAACTTAATCTCAGGTTGAAACCGGAAATTGAAACAGAGGATGTTAACGAGACAGGAAAAAAACAGCGGTGCCAGTGCCCAGATTGTGGCAAGAAGTTTGTGTACGCTCAGCAGTTGTATCAGCATCTGAAGGAAGCTACGGATTTCAAGAGAGCGTGTTATGTATGTGCGAAAATTATGGGCAGAGATGAGTTAGTGTTACATTTAAACGAAGACCACAATCATGAGCCGTATGCCTGCAAAAAGTGCCCTGCCCTGCTACGATCCTACAGCCAGTACGCTCGACATTTACAGAAGGCCCACTCACGAGGCTCGTGCACTTGTGGCGAGTGCGGGAGAAGCTTCAGAACATCCAACGCTTTCCGCGCCCATCTCTCCATTCACTCCATCAAAACTTGCCCCGGCTGCGACAAGTTGTTTCGCAACCAAACCTGCTATTTGTACCACACAAAAAAGTGCTGCAACTTAGACAGTAAACGAGAAGCGTATAAAGGCAGGATTGTTGAAGTGAAGAACCGGAGGAGCGACAAGAGCATCAAAGTCGGATTGCGCGGGAGGACAAACAAAGAGTGCATTTGTGACTACTGCAAGAAGAAATTCGCAGGAAAGAGATTCGTTTCCGCTCACATACAAATAGTCCACATGAAGAACACGCACCGGCCCTGCGTGTACTGCGGGAAGTACCTCGCGGCGGCGCACATGACGGAGCACGTGAAGAGGCACGAAGAGACCAGGTTGTACAAATGCGGACACTGCGGCATCGTCTTGAAGACCAAATTGGGTTACAGTCAGCATTTGCGTCTTCACAGCGGCGAGCGGCCGTACGCCTGTCAGTACTGCGGCGAAACCTTCTCGGCATCTTCAAGGAGGTCGGAGCATATACGCAAGACGCACAGGAGTTCGGAGATCGTGCTCAAGCACGCGTGCGAACAATGTCCAGCAAAATTCCGGCTCCCATACAGACTGAGGAAGCACGTGGCTTCTGTGCACAATGCGGATAAAGATGACTCGCTGTTCGAATGCTCAGAGTGCCACGAGAAATTCAGCAGCGCCAGGGGGCTGCTGCATCACAGCAGGACCCACCAGCACCTATTATCTGGTGCAAGGAAGCCGACGAACGAAATGAAATGTAAGGTGTTCAGCGAGCCGGTGAAGAACGGTAGTACAATATAA
- Protein Sequence
- MSRQIDIKALVSHVVRGDGINKCRICMGDTTEGQVFLGDTVMMDGDQPVTLSELLETITGVEMPMSEDLPYSLCSACSLCALRAGQFRTICRQAAHKWDSMLQLLSTIPEVVNKTKTLFAIVEMDQMILFDDCDDLPNAKLAADKLNLRLKPEIETEDVNETGKKQRCQCPDCGKKFVYAQQLYQHLKEATDFKRACYVCAKIMGRDELVLHLNEDHNHEPYACKKCPALLRSYSQYARHLQKAHSRGSCTCGECGRSFRTSNAFRAHLSIHSIKTCPGCDKLFRNQTCYLYHTKKCCNLDSKREAYKGRIVEVKNRRSDKSIKVGLRGRTNKECICDYCKKKFAGKRFVSAHIQIVHMKNTHRPCVYCGKYLAAAHMTEHVKRHEETRLYKCGHCGIVLKTKLGYSQHLRLHSGERPYACQYCGETFSASSRRSEHIRKTHRSSEIVLKHACEQCPAKFRLPYRLRKHVASVHNADKDDSLFECSECHEKFSSARGLLHHSRTHQHLLSGARKPTNEMKCKVFSEPVKNGSTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01115951;
- 90% Identity
- iTF_01496837;
- 80% Identity
- -