Thel019952.2
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000033.1:751377-760791[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.2 19 6.6 1.9 1 23 239 261 239 261 0.95 2 16 0.019 1.8 9.8 0.0 3 23 291 312 289 312 0.92 3 16 0.33 31 5.9 0.4 2 23 333 355 332 355 0.94 4 16 0.0045 0.42 11.8 2.1 2 23 361 383 360 383 0.94 5 16 1.2 1.1e+02 4.1 2.0 1 23 388 411 388 411 0.95 6 16 1.3 1.2e+02 4.0 0.1 2 23 414 436 413 436 0.92 7 16 1.7 1.7e+02 3.6 3.7 2 21 443 462 442 463 0.93 8 16 0.0047 0.45 11.7 0.4 1 23 524 547 524 547 0.92 9 16 1.3 1.2e+02 4.0 0.1 3 23 576 597 574 597 0.90 10 16 0.03 2.8 9.2 0.2 3 23 621 643 619 643 0.95 11 16 0.00046 0.044 14.9 0.6 3 20 650 667 648 671 0.90 12 16 0.0073 0.69 11.1 0.4 1 23 676 699 676 699 0.97 13 16 0.0015 0.14 13.2 1.6 2 23 705 727 705 727 0.94 14 16 3.4e-05 0.0032 18.4 4.7 1 23 731 754 731 754 0.97 15 16 0.00013 0.012 16.6 0.7 2 23 761 782 760 782 0.96 16 16 0.00079 0.075 14.1 1.3 1 23 788 810 788 810 0.97
Sequence Information
- Coding Sequence
- atggagTTTGATGAGATTGTTGTGAAGGAGAGCCCGGGCCTATGCCGGTGCTGTCTTTCTGAAGGATGTTATAAAGATCTTGGTACCGAATATTCATGGATGGACGATACTGAAATTTATGCGGATATGTTGCTGGAATGTTTTGATATAAGTATATCACAACACAATGATGGTCCAAATGGACCTAACAGACTAATATGTGAGGTGTGTATTACTAGGTTAAGAGATGCTTGCAATTTCAAGAAGCAGGTGCTGACGTCTGAGAAGAACTTTGTAGATATGGTTGGTAGGGGAGCTTTTAAACCTAAAGTTCTTGTATACCAGAATCCAGTCAAAGTGGAAATGAATTTAGAACCTATACAGCGGACTGAGGAACCTGTGGTGGAATATCTTGAGGAGGGGATAGATTTTGCTGATgATGAAGTAGTAAAAGAGAGTGATACAGAACAAATAGCTTTATCGGAAGACATAACAGTTGCAACACTACCAGTAAAAGGCAAAAGAGGAAGGCCTAGAAAGAATGCTGTTGTTAAAACTACAAAGAAGGTCAAACTGGCTAAGGCTGATGATAAACCGAAGACTTCTAAGGCTGTGACCAAAGATGTTAAAGCGCGCAAATACAAAGGCTGCGAATCGTCGTCGATGCGTAGACGGAAAAACCTTCAGATTTTATTCAACAATACTTCGGTGATACCTTTCAAATGGAGGGGTAAATACCTGTGCTTCTATTGCAGCGAACACCTTATTGCGTACGATGAATTGAGACGCCATACGAAATCACACGGAGACTGCTCCATTGGTGATCACTCCTTGAAAGTCCTCAAAGGCGGTCAGAATATGGAAATCAAAATTGACGTATCAGACATAATCTGTCAGATATGCAGCAAACCATTCCCAAATATCGATGAAGTGTTAAATCATTTGAACGACAAACACAAGCTCCAATACGAAAAGAATGTGGAAATGGCTATAGAAGAATATAGATTGGCCGATCTAAAATGTTTACTGTGCGATGATAAATTCTCTTACTTCGGTTACCTAGTATCACATGTGAACAATAACCATCCAAAGAATTGCTTGATATGCGATAGCTGCAAACAAAAGTTCAACAAGAAAAGGGACCTGTTCTCGCACATCAAAAATTATCACAGAGAAGGTGGCTACAGATGCGATCTATGCATGCAGAATTTTACCTCATTAAACATCTTAaggaaacataaaaataatagacaTCTGACTAGGTGTAATATATGCCAGTTGAATCTGCCGTCGGCTGCTTTAAAACAGAAACACGTAGATATGGAGCACCCAGACGACGGCTCCTTGCAATGCGATAACTGCTGCAAGGAGTTTCACACTAAACAGGGCCTAAAAATGCACGAAAGGAAATGTAAAGGAGTTGAGGAAATGTTTGGAATTGCGATCAAACGAGAAGGCTACGAAGCTATGGATTTGGATGAAAATTACGAAGATCTTACAAAGAGACCCAGCGTTAAACAAATTAGAGAGAACATCGTGATAGTCATCAATATGTCCACGGCGATACCTTTCAATTTCTACAAGAACAAATTCAACTGCTTCTACTGTTCCAAAGATTTCCCGGATTCGGAATCCATGCGGGATCACACGGTAGTTGAACATCCGGTGTGCGATATCAAACAGAAATGTATCAGGAAATGTAGGGAGTCGGTGGCTTGTGTGAAAATCGATATATCCACACTCGCGTGTAAGATTTGTTTCCAAACCATGAACGAATTAGATAATCTGATAGAGCATTTAATAGACAAACACAACGCTAATTATGATAAGTCCATCACAACTTGCTTGCAACCGTACAAACTTATTAAAGACAATATGGCGTGTCCGGTTTGTCCAAACGAAGTCTTCAGATTCTTTGGTACGTTACTAAAACacatgaataaaaaacataCGAACAACAATATAATATGCGTATACTGCGGTCAGACATTTAGGCGGGATCAAAACCTTAGAGTGCACATCTGGCGCCATCACAGGGACGGCAGGTTCAAATGTAACATATGTGGTGCCGAATGCAATATACCATCACGTCTCTACATGCACATGGCGAAAGCTCACGGTGTGAAAGCCGCCAAGTGTCCAAAGTGCTCCGAATGTTTCGCAACGCAATATTTAAGACAGAAACATTTGATAGAGGCGCATCAGTCTGGCCACAAGTGCTCGTATTGCGGCAAACTTTTCACGAGGAATTCCTTCATGCGCGATCACATCAGGCGAACACATCTGAAGGAGAAGAATGTTGAGTGCACAATTTGTAATATGAAATTCTTTAACAACATCCTTCTAAGGAGACACATGGTGAAGCACAGCGGCGAGAAAAATTTCAACTGCGATGTTTGCGGCGAACGCTTCTATTGGAGAAAGAGTCTGCGCAACCACATGACGAGGCACAGTAAACTCGTTGCTCCATTGCAAATATAA
- Protein Sequence
- MEFDEIVVKESPGLCRCCLSEGCYKDLGTEYSWMDDTEIYADMLLECFDISISQHNDGPNGPNRLICEVCITRLRDACNFKKQVLTSEKNFVDMVGRGAFKPKVLVYQNPVKVEMNLEPIQRTEEPVVEYLEEGIDFADDEVVKESDTEQIALSEDITVATLPVKGKRGRPRKNAVVKTTKKVKLAKADDKPKTSKAVTKDVKARKYKGCESSSMRRRKNLQILFNNTSVIPFKWRGKYLCFYCSEHLIAYDELRRHTKSHGDCSIGDHSLKVLKGGQNMEIKIDVSDIICQICSKPFPNIDEVLNHLNDKHKLQYEKNVEMAIEEYRLADLKCLLCDDKFSYFGYLVSHVNNNHPKNCLICDSCKQKFNKKRDLFSHIKNYHREGGYRCDLCMQNFTSLNILRKHKNNRHLTRCNICQLNLPSAALKQKHVDMEHPDDGSLQCDNCCKEFHTKQGLKMHERKCKGVEEMFGIAIKREGYEAMDLDENYEDLTKRPSVKQIRENIVIVINMSTAIPFNFYKNKFNCFYCSKDFPDSESMRDHTVVEHPVCDIKQKCIRKCRESVACVKIDISTLACKICFQTMNELDNLIEHLIDKHNANYDKSITTCLQPYKLIKDNMACPVCPNEVFRFFGTLLKHMNKKHTNNNIICVYCGQTFRRDQNLRVHIWRHHRDGRFKCNICGAECNIPSRLYMHMAKAHGVKAAKCPKCSECFATQYLRQKHLIEAHQSGHKCSYCGKLFTRNSFMRDHIRRTHLKEKNVECTICNMKFFNNILLRRHMVKHSGEKNFNCDVCGERFYWRKSLRNHMTRHSKLVAPLQI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01496012; iTF_01115921; iTF_01494551; iTF_00180699; iTF_00249919;
- 90% Identity
- iTF_01494551;
- 80% Identity
- -