Thel019953.1
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000033.1:761545-766548[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.088 8.3 7.7 4.3 1 23 14 37 14 37 0.96 2 22 3.6 3.4e+02 2.6 0.5 2 23 65 87 64 87 0.92 3 22 0.00089 0.084 14.0 0.3 2 23 110 132 109 132 0.94 4 22 0.28 26 6.1 0.9 3 23 139 160 137 160 0.92 5 22 0.052 4.9 8.4 4.3 1 23 165 188 165 188 0.95 6 22 0.72 68 4.8 2.3 1 23 193 216 193 216 0.92 7 22 0.004 0.38 11.9 3.6 1 22 220 241 220 241 0.95 8 22 0.00013 0.012 16.6 0.5 2 23 250 271 249 271 0.96 9 22 1.6 1.5e+02 3.7 0.3 9 23 281 296 280 296 0.95 10 22 0.19 18 6.6 0.5 2 19 302 319 301 322 0.93 11 22 0.00033 0.031 15.3 4.1 3 23 408 428 406 428 0.97 12 22 0.012 1.2 10.4 0.1 2 23 456 478 455 479 0.94 13 22 0.5 47 5.3 0.5 1 23 498 521 498 521 0.92 14 22 0.00058 0.055 14.5 5.3 1 23 526 549 526 549 0.97 15 22 7.6e-05 0.0072 17.3 2.9 1 23 554 577 554 577 0.95 16 22 0.0077 0.73 11.0 2.1 2 20 580 598 580 602 0.94 17 22 0.0033 0.31 12.2 1.6 2 22 609 629 609 629 0.95 18 22 0.12 12 7.2 4.2 1 23 685 708 685 708 0.95 19 22 0.65 61 5.0 0.1 2 23 736 758 735 758 0.92 20 22 2.2 2.1e+02 3.3 0.1 3 23 782 804 780 804 0.92 21 22 7e-05 0.0066 17.4 0.6 3 23 811 832 810 832 0.94 22 22 0.015 1.5 10.1 3.2 2 20 837 855 836 857 0.92
Sequence Information
- Coding Sequence
- atgtcaacGGCTATACCATTTAAGTACTATCAAAACAGATTCACCTGTTTCTATTGCTCCAAAAGTTTCTTGAGGCATGAGGAGATGCGAGATCACACCACAACCTTGCATACTATAGAAAATATAGAAAGTAGCCTATCACAAATTTTGAAGAGAACCACCTCGCACGCTAGCATTGACATAGCTTCATTATCATGCAGAATTTGCATGGAAAAATTCGATGAATTAGACTGTCTTATAgatcatttaattaatacacaCGATGCTGAATACGACAAGAACACACATATGGCAATACCAGCTTTCAAACTAATCAAATATGTGATGCCGTGCAATAAATGTCCACAAAGTTTTGCTTACTTCAACTCCttacttaaacatttaaaagcaGATCATAATCCGAAGTCACATTTGTGTTCTTCTTGCGGTACGCGATTCGGAAGCGAAACTGTCTTAACCTCGCATGAATCCCGGATACACGGGAAATGTACGTTCAAATGTGCACACTGCAATTCCACATTCAAATCTATGATCAAACTGAGGAGTCATAAGGCGAGGTTCCACGGCTCGAAGGAGTTCTCGTGTTCGCATTGTAATGAGAATTTTTTAACAGATTACGGAAAACAGAGGCATTTACTGATGATGCACGGATTAGGTCACAAATGCACGCATTGCGATAAGATGTTTGTGAAAGATTCGTTCATGAGGAATCACGTCAGGAGGACACAACTATCGGAGCGCGAGGTCGAATGTGCGGTGTGTAAAAGGAAGTTCTTCGATAAAGAGCAACTAAAAGTTCACATGGTGAAACATTGCGGTTCTAGGGACTTCCATTGCGACTCTTTCACTACTGCGAGCAAAAGGTTGAAGCATATGAAGATGGACCATGACTTAGGCGGACTGCAATGCGGTTACTGTTTTAAAGTTATGACGACGAAGCAGAGTTTTCTTCGGCACGCTTCCTTTTGCACACAACATATCGATTGCATTAAAACTAACGGTTTAGTAGAAGCAGACGAAAGAAAACCTTCAGTGAAAAGGATTAGAAGTGATTTGGCTTGCCTCCTCAACATGTCCACGGCTATCCCATTTAAACACTATCTCAATGAAACAAAGCAAGCCACGTGCGAGACCTTTACCTCCGAGAAGAGGAGGAGAAACTTGCAAATTCTATTCAACAACACCACAATTTTGCCATTCAAATGGCGTGGGAGATGTCTCTGTTTCTATTGCGGAAAGAGCTATGCACAGTATAACGACTTTAGAAAACACACGCGATCCCACGGTCCGTGCACAACAAAAGATTACGCATTGAAAGTGATTAAAGGAAATCACATCGAGATAAAAATCGATGTGTCAGAGATCTCGTGCGAGATCTGCAACGAACCATTCGCCACATTCGATGAAATAATAAGTCATTTAATCGTGAAACACCACATGGAATACGATAAATCTGTAAACACGCCGTTCCAAGAATACAGACTGGTGGATTTCCGTTGTATTTTTTGCGAAGAGCAATTTACTTACTTCGGATATTTGGTCAATCACGTAAATAATGTACACCCTCAAAACAGTTACCACTGCAAAGATTGCGGCACGTTCTTTAATAAAAAGAGAGATCTAGCATTGCACTTACGGCATAACCATCGCGAAGGTGGATACCCTTGCTCCGAGTGTTCTCAAACTTTCAAATCTCACAGTTTACTGCGTAGCCATCAGAACGATTTTCACTTCAGAAAATGTAAATGGTGCGGACTAAACTTTGCTTCCTATAGTCTCCTACTAAAGCACACGCAATGCGACCACCCGGACGACGGCAGCGCCAAATGCCCGCATTGTTCCAAACAGTTAAACTCTTCGCAAGGTTTAAAGCAGCATATGAACAAATGTAAGGTTAACATGTTAGTTAAAATAGAACATCCTGTCGATGACAACTTCTCCGAAGACAATTTGCTGCAACCGAAGAAGAAACAGAATATACTGCAAATACGTCAGAATATCCAAAGTGTTCTCAACATGTCAACTGCGTTGCCTTTCAAGTTTTTCGCGAAATTTTGTTGCTTCTATTGCCCTAAGAAGTGTGTCGAATTTGACGAGCTCAAGGAGCACACTATTTCAGACCATCCGGTATGCGATTTGAATTCGAAAAGCATGAAGAAATGCAAAGGCGAAAGGATAACGGTAAAAGTCGACATAACGGATTTGAGATGTAAACTTTGCGGTCGACAAATGGACACTTTGGACGTATTGATAGATCATCTTATATCCAAACATGAAGCGGCCTATGATAAATCTGTAACTGGATGTCTAGAACCATACAAAATGGTGAAAGACAATATAGCGTGCCCATTTTGCCCAAATCGCGTGTTTAGATATTTTGGCATCCTATTGAGGCACATAAACTCCgaacatagtaataataacagAATTTGCGATTTCTGTGGTCGCAGTTTTAAGAGCGTGACTAATTTGAAGGTCCACATCACGTACACGCACACAGGTGCGTGCGAGTGTGACGTGTGCGGAACTAAATACAAGAACCAGTGGTGCCTGAGCCGGCACAAAGCGAAGCCACAATGCGAAGGACTACAAATGCCCTAA
- Protein Sequence
- MSTAIPFKYYQNRFTCFYCSKSFLRHEEMRDHTTTLHTIENIESSLSQILKRTTSHASIDIASLSCRICMEKFDELDCLIDHLINTHDAEYDKNTHMAIPAFKLIKYVMPCNKCPQSFAYFNSLLKHLKADHNPKSHLCSSCGTRFGSETVLTSHESRIHGKCTFKCAHCNSTFKSMIKLRSHKARFHGSKEFSCSHCNENFLTDYGKQRHLLMMHGLGHKCTHCDKMFVKDSFMRNHVRRTQLSEREVECAVCKRKFFDKEQLKVHMVKHCGSRDFHCDSFTTASKRLKHMKMDHDLGGLQCGYCFKVMTTKQSFLRHASFCTQHIDCIKTNGLVEADERKPSVKRIRSDLACLLNMSTAIPFKHYLNETKQATCETFTSEKRRRNLQILFNNTTILPFKWRGRCLCFYCGKSYAQYNDFRKHTRSHGPCTTKDYALKVIKGNHIEIKIDVSEISCEICNEPFATFDEIISHLIVKHHMEYDKSVNTPFQEYRLVDFRCIFCEEQFTYFGYLVNHVNNVHPQNSYHCKDCGTFFNKKRDLALHLRHNHREGGYPCSECSQTFKSHSLLRSHQNDFHFRKCKWCGLNFASYSLLLKHTQCDHPDDGSAKCPHCSKQLNSSQGLKQHMNKCKVNMLVKIEHPVDDNFSEDNLLQPKKKQNILQIRQNIQSVLNMSTALPFKFFAKFCCFYCPKKCVEFDELKEHTISDHPVCDLNSKSMKKCKGERITVKVDITDLRCKLCGRQMDTLDVLIDHLISKHEAAYDKSVTGCLEPYKMVKDNIACPFCPNRVFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYTHTGACECDVCGTKYKNQWCLSRHKAKPQCEGLQMP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -