Basic Information

Insect: Troides helena
Gene Symbol: -
Assembly: GCA_029286815.1
Location: JAGSMV010000041.1:466187-471206[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 29 0.005 0.47 11.6 0.1 1 23 96 119 96 119 0.91

2 29 0.002 0.19 12.9 2.6 1 23 190 212 190 212 0.98

3 29 0.00015 0.015 16.4 0.5 1 23 216 238 216 238 0.97

4 29 0.0087 0.82 10.8 0.8 1 23 272 295 272 295 0.91

5 29 0.079 7.5 7.8 1.9 1 23 302 325 302 325 0.93

6 29 0.77 73 4.7 0.0 1 15 332 346 332 349 0.89

7 29 0.05 4.7 8.5 0.1 1 20 392 411 392 414 0.86

8 29 0.01 0.95 10.6 0.3 2 23 440 462 439 462 0.93

9 29 0.2 19 6.5 1.4 1 23 484 506 484 506 0.98

10 29 0.013 1.2 10.3 4.1 1 21 510 530 510 532 0.94

11 29 0.2 19 6.6 0.1 1 23 537 560 537 560 0.95

12 29 0.047 4.4 8.5 3.0 1 23 566 589 566 589 0.96

13 29 0.024 2.2 9.5 0.1 1 23 647 669 647 669 0.95

14 29 0.022 2 9.6 5.7 1 23 737 759 737 759 0.98

15 29 7.1e-06 0.00067 20.6 2.5 2 23 764 785 764 785 0.97

16 29 0.87 82 4.6 4.4 1 21 792 812 792 815 0.95

17 29 0.012 1.1 10.4 3.0 1 23 821 844 821 844 0.98

18 29 0.012 1.2 10.4 3.0 1 23 850 873 850 873 0.97

19 29 9.6e-05 0.0091 17.0 1.6 1 23 879 901 879 901 0.98

20 29 0.022 2.1 9.6 2.2 1 22 907 928 907 928 0.96

21 29 0.01 0.97 10.6 0.4 2 23 1034 1055 1033 1055 0.97

22 29 0.021 2 9.6 3.2 1 23 1077 1099 1077 1099 0.97

23 29 0.00018 0.017 16.1 0.6 1 23 1103 1125 1103 1125 0.98

24 29 0.0053 0.5 11.5 0.1 1 23 1130 1153 1130 1153 0.95

25 29 0.00021 0.02 15.9 2.0 1 23 1159 1182 1159 1182 0.98

26 29 0.087 8.2 7.7 1.2 1 23 1189 1212 1189 1212 0.95

27 29 0.24 23 6.3 4.3 1 23 1218 1240 1218 1240 0.93

28 29 1.4e-06 0.00013 22.8 1.0 1 23 1246 1268 1246 1268 0.99

29 29 3.6e-06 0.00034 21.5 1.0 1 23 1274 1297 1274 1297 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	29	0.005	0.47	11.6	0.1	1	23	96	119	96	119	0.91
2	29	0.002	0.19	12.9	2.6	1	23	190	212	190	212	0.98
3	29	0.00015	0.015	16.4	0.5	1	23	216	238	216	238	0.97
4	29	0.0087	0.82	10.8	0.8	1	23	272	295	272	295	0.91
5	29	0.079	7.5	7.8	1.9	1	23	302	325	302	325	0.93
6	29	0.77	73	4.7	0.0	1	15	332	346	332	349	0.89
7	29	0.05	4.7	8.5	0.1	1	20	392	411	392	414	0.86
8	29	0.01	0.95	10.6	0.3	2	23	440	462	439	462	0.93
9	29	0.2	19	6.5	1.4	1	23	484	506	484	506	0.98
10	29	0.013	1.2	10.3	4.1	1	21	510	530	510	532	0.94
11	29	0.2	19	6.6	0.1	1	23	537	560	537	560	0.95
12	29	0.047	4.4	8.5	3.0	1	23	566	589	566	589	0.96
13	29	0.024	2.2	9.5	0.1	1	23	647	669	647	669	0.95
14	29	0.022	2	9.6	5.7	1	23	737	759	737	759	0.98
15	29	7.1e-06	0.00067	20.6	2.5	2	23	764	785	764	785	0.97
16	29	0.87	82	4.6	4.4	1	21	792	812	792	815	0.95
17	29	0.012	1.1	10.4	3.0	1	23	821	844	821	844	0.98
18	29	0.012	1.2	10.4	3.0	1	23	850	873	850	873	0.97
19	29	9.6e-05	0.0091	17.0	1.6	1	23	879	901	879	901	0.98
20	29	0.022	2.1	9.6	2.2	1	22	907	928	907	928	0.96
21	29	0.01	0.97	10.6	0.4	2	23	1034	1055	1033	1055	0.97
22	29	0.021	2	9.6	3.2	1	23	1077	1099	1077	1099	0.97
23	29	0.00018	0.017	16.1	0.6	1	23	1103	1125	1103	1125	0.98
24	29	0.0053	0.5	11.5	0.1	1	23	1130	1153	1130	1153	0.95
25	29	0.00021	0.02	15.9	2.0	1	23	1159	1182	1159	1182	0.98
26	29	0.087	8.2	7.7	1.2	1	23	1189	1212	1189	1212	0.95
27	29	0.24	23	6.3	4.3	1	23	1218	1240	1218	1240	0.93
28	29	1.4e-06	0.00013	22.8	1.0	1	23	1246	1268	1246	1268	0.99
29	29	3.6e-06	0.00034	21.5	1.0	1	23	1274	1297	1274	1297	0.97

Sequence Information

Coding Sequence: ATGCGCATACACATGAAGGATGGGAATGTTCCTTTTCGATTTAGTAACACAGAATCGTTTTGTTTTTTAGGTTCCGCTAAAGCGGAAGCGGTGGAAAAAGTAGTTAAACGAGTTAGGAAGTTAAAGGAAAACGTGAGCGCGCGCCAAATGCGGAGACGCCGGCGCGCGAACAATGAGCTGCCGGAGGAATCGGAAAAGCGGATTTCCAAAACAATGATGAGAAGGAACGCGTTGACCATTCTGGAGTGTTCAACCGCGTGGGCGTTCCGCTGGTTTCACAGCGCGTTTTACTGCTCCTATTGCGACGAAAAGTTCGTTGATACCGCACCCCTGCGGGAACACGTAATCGCATCACACATCTCGAATAATCCCACTGGACGCGTATTCTCAAAATTAACCGAAAACAACATGCTTAAAATCGACATCACCGATTTAAGTTGTAGGCTTTGCAGCTGCAGCTGCAGCaacataaatatacttaaagatCACTTGACAACAGcacataaaaagaaaatttcgaACGAGCACAGCGATGGTGTGTTACCGTTCAAACTCGACCAGGACGGGTTCTACTGtcaaatatgttttgaatatttcaCCAGCTTTACAAAGTTAAACGAGCATATGAATTCGcattatcaaaattatatatgtgaCGCTTGCGGAAAAGCTTTCGTCTCGAAATCTAGATTCAGAACTCATGTACAGTCGCACGAAATCGGAAGTTTCCCTTGCGGTGAATGCGATGAGGTGTTACACACGCGGGCTGCTCGCATGTGTCATAGGTTGAAAGTGCACAAGAAAGGTGTTAGGTACACATGCCCGCGTTGTTCAGAAGTTTTCACAACTTATTACACGAGAGCGAAACACTTGGTCGAGAGGCACGCGCAGCAGAGGAGGGACTATGAGTGCACTGCTTGCGGGAAAGCCTTCGAGACGAGTTGCAAGCGGGCAACGCACTTTCGCGCAACCCACAAACCTGTCGAGAAACGATACGAGTGTCTGTATTGCCCTTGGTACTTTGTCAGAAACGAAGAAATCATTGCATCCGAACAAAAAGAAAAGGTTAAAGTTAAATGGAACAGGAAACGTAAGCTAGCCGAGGATAAATCCAATGCAGCAATTATCTTGCAATGCTCAAACGCCGTCACATTTAGATGGAAACGTGGAAGGTTCATGTGTAGCTACTGTCCCCGCGTGTTCCCCAGCGTCGCCGACATCCGTCTCCACTCTGTCGAGCATAAAAATAAACTGGCTGTCTTCGAAAATTCCAAAGTGCGAAATTCTTTCCCTCTACGAGTAGACATTGCTGATCTGACTTGTAATTTGTGTAGGCAAAAATTTGACAATTTGGATAATTTCGTAGTCCATCTGTCGGAAGTACACGAGAAAAGTTTCCATATGAATCATGGCAATGGTTTGTTGCCGTTTATGCTGACTGATGGGGAATACAGATGCGTTAATTGCCACAATCAGTACGAGAGTTTCATGGGTCTTTTGGCTCACATGAACCAACATTATGCTACTTTCATCTGTTATATCTGTGGCAAGGGTTACTCAGGGAAACATAAACTGCAGTCCCACCTAAAGTGCCACGAGTCGGGGAAATTCGAGTGCCCCAAGTGCGACAGTGTACTGCCGAGTAGGACTGCTAAGAGTAGACATCTGTCGGTTGCTCATGGACCTAGAGAACGCTATCGATGTCCGCTCTGCGAAGAACACTTCATCTCTTATCATTCTCGATTACGGCACCTAGACAAAGTTCACGGAAGAAAGTCTGAGTATAGATGCAATATGTGTACTTCTATATTTGCTAGTGgAACCGCGGATAACAATGTTAGATGGAAACCGAATCGCAAGTACAACGATCAAAGAGATAACGCCGGTGTTATTATTGAGTTTTCCAACATTTGCCCGTTTAGATGGAAAAGAGGTGAATTCGCTTGTGCCTATTGTCCAATCACATTTGGGGATTTCACGGATGTCAGGAGGCACACAGCGAACCACCGCCACAGGGTCGAGGCACTGCGCTATGTGCGACCAGTCAATTCAATCAAAGCCGATATATCAAATTTGCAATGCGTCCTCTGTTTTAAAGGCATGGAAGATCTAAACGGGCTTGCCGACCATTTGTTCACCGACCACAACAAACCAATCGATAAACAATTCGGTTTCGGCATAACCCCATTCTTTTTGAATAGCAAAAAGTACGTTTGCTACCATTGCAAAAAGCATTACGACTTATTTACAAATCTAAACATTCACATGAATCAGCACGATAGGAATAACGTATGCTTCAAATGCGGCAAAACTTTCTCCTCCTCCCATCGGCTACAGGCTCACATGATCACCCACGAGGGTGCTGATGATATGTTTAGATGCACCAAATGCAGCGATACCTTTGCCACACGGAAGCTCATGAGCAGCCACATGAACTGCAAACACGGTACACCGTACAGATACAAGTGTCCTTACTgcaaagataaatttaaaacctACGGCGATAGATCGAAGCATCTTAAAAAAGACCACAATAGAAATGTTGAATATCCTTGTCATCTGTGCACTGCTGTGTTCGCTCAATGTAACCAAAGGACGAAACACATCCAGCGTGTTCACTTTAAATTTGAACCTTACAAATGTCAGTATTGCGATTACAAATCCTCAACGTCATCCAAGTTGCAGAATCATGCGCTGATACACTTGTCTTTGAAGCAGTTTAAGTGCGACGCTTGCGATCAAGTCTGCAACAGGTTGAAAACATACCGTCAGCACATACGAAGAAAAGCGGAAGAGATACAGGTTAAGAGCGAAGTGGAATCTGATAGAGAGAATGTCAGCGCCGCCGTCATGGCGTCAGCTCGTGAGGCAGGCAAGGAGAGACGCGCCGTCTTCAGGAACAACATAAAAATCATAATGGAATCGTGCACCGCTTACCCGTTCAAGTACAGGAAGGGAACCTATTTGTGTTTCTTCTGCAAACAGTCTTTCCTAGAGCCGGAACGCTTGCGCGAACACAACCAGCAGCAGCACACGGACGTGAAGCATGTGCTGAAACCGCGAAAGTACGAACCGCTGAAGATAGACTTTGCAGTCACAACGTGCAAAATATGCAGCGCATCTATCAAAGATTATGAAATGCTGAAATCACACCTGCGGGAGCACGGGAAGACGCTCGACTGTTCGCACGGAGACAGCGTGCTGCCGTACAGCCTGACAAGGGACAACCACCGTTGCCAGATATGCGGCAAGCGTTACGAGATGTTCCTCAGCTTGCACATACACATGAACGACCACTACGAACACTTCATCTGCGAGACCTGCGGGAAACGTTTCGCGACCTCCCAACGGATGGTGAACCACGCGCGTACTCACGAGCGGGGCGACTTCCCTTGCAAACGGTGCCTGGAAACATTTCCCTCCTACGCGTCTTTGAACGCCCACGTGGCGAAGGTCCACAGATCCAACAAGAGATACAAGTGTCCGATATGCGACGAGAAGTTCGCCTCGTACAAGCACAGGTTGAAGCACCTCAGCACAGTGCACGGCGAGAAGACGGCGCTCTTTCCATGCCCGTCGTGCCCCCGTGTCTTCGACCTGTGCAGCCGGAGGACCGCTCACATACGCTTCCAGCATCTGCAGGAGCGGAACCACTCGTGCCAACTATGTTTCATGAAGTTCTTCACTAAATACGAGCTGAGGGAGCATTCGGTGAAGCACGGCGGCGAGAGGATATACCAGTGCGACGTTTGCAAGAAGTCATACGCGAGGCTGAAGACGCTGAGGGAGCACATGAGGATTCATAACAACGACAGGAGATTTGTTTGTCCTGTTTGTGGGCAATCGTTTATACAGAACTGTAGCTTAAAGCAGCACGTCagggtataccatcctaatcaAGTAAAGGCTGATGTATATTAA
Protein Sequence: MRIHMKDGNVPFRFSNTESFCFLGSAKAEAVEKVVKRVRKLKENVSARQMRRRRRANNELPEESEKRISKTMMRRNALTILECSTAWAFRWFHSAFYCSYCDEKFVDTAPLREHVIASHISNNPTGRVFSKLTENNMLKIDITDLSCRLCSCSCSNINILKDHLTTAHKKKISNEHSDGVLPFKLDQDGFYCQICFEYFTSFTKLNEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGSFPCGECDEVLHTRAARMCHRLKVHKKGVRYTCPRCSEVFTTYYTRAKHLVERHAQQRRDYECTACGKAFETSCKRATHFRATHKPVEKRYECLYCPWYFVRNEEIIASEQKEKVKVKWNRKRKLAEDKSNAAIILQCSNAVTFRWKRGRFMCSYCPRVFPSVADIRLHSVEHKNKLAVFENSKVRNSFPLRVDIADLTCNLCRQKFDNLDNFVVHLSEVHEKSFHMNHGNGLLPFMLTDGEYRCVNCHNQYESFMGLLAHMNQHYATFICYICGKGYSGKHKLQSHLKCHESGKFECPKCDSVLPSRTAKSRHLSVAHGPRERYRCPLCEEHFISYHSRLRHLDKVHGRKSEYRCNMCTSIFASGTADNNVRWKPNRKYNDQRDNAGVIIEFSNICPFRWKRGEFACAYCPITFGDFTDVRRHTANHRHRVEALRYVRPVNSIKADISNLQCVLCFKGMEDLNGLADHLFTDHNKPIDKQFGFGITPFFLNSKKYVCYHCKKHYDLFTNLNIHMNQHDRNNVCFKCGKTFSSSHRLQAHMITHEGADDMFRCTKCSDTFATRKLMSSHMNCKHGTPYRYKCPYCKDKFKTYGDRSKHLKKDHNRNVEYPCHLCTAVFAQCNQRTKHIQRVHFKFEPYKCQYCDYKSSTSSKLQNHALIHLSLKQFKCDACDQVCNRLKTYRQHIRRKAEEIQVKSEVESDRENVSAAVMASAREAGKERRAVFRNNIKIIMESCTAYPFKYRKGTYLCFFCKQSFLEPERLREHNQQQHTDVKHVLKPRKYEPLKIDFAVTTCKICSASIKDYEMLKSHLREHGKTLDCSHGDSVLPYSLTRDNHRCQICGKRYEMFLSLHIHMNDHYEHFICETCGKRFATSQRMVNHARTHERGDFPCKRCLETFPSYASLNAHVAKVHRSNKRYKCPICDEKFASYKHRLKHLSTVHGEKTALFPCPSCPRVFDLCSRRTAHIRFQHLQERNHSCQLCFMKFFTKYELREHSVKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQSFIQNCSLKQHVRVYHPNQVKADVY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -