Thel012186.1
Basic Information
- Insect
- Troides helena
- Gene Symbol
- -
- Assembly
- GCA_029286815.1
- Location
- JAGSMV010000016.1:8936333-8937848[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-09 1.9e-06 28.0 0.1 7 40 14 45 12 50 0.86 2 2 3.4 6.3e+03 -2.4 0.1 16 21 121 126 121 128 0.90
Sequence Information
- Coding Sequence
- ATGAGCAGTGATCGCTTCGCGTTGCAGCTAACCGCCGCTAATGCTTTGAAAGCTGTTGACACTGGTATTTCACTGAGAAAAGCTGCTGCAGTGTACGGAGTTCCCATAGCTACACTCTCTAGAAAAAAAGGGAACCCTGAAATATCCAAACAAAAAACTGGACCAGCAACTGTTTTTTCTGATACCGAAGAACAAAAAATAGTTGATTGGATTCTTTTTAGAGCTCAGCGTGGTTTACCAGTAACTAAAACAGAGCTCTTGGATTCTATTCAACAATATGTGAAAAAGTCAAAAGAAACTCCGTTTATTGATAGTCAGCCGAGCCGACATTGGTATGAGGGCTTTCGAAAACGACACCCTCAAATGTCAATCAGGAAGCCACAACATCTGACTCATAGTAGAGCAGCAGTGACCGGTGATGACCTGAAAGATTGGTTTGATGAACAAGCTAAGTATTTAACTGAAAAAATTAATGGAGATTCCTTCTACGAGAATTTTCAACTGTGA
- Protein Sequence
- MSSDRFALQLTAANALKAVDTGISLRKAAAVYGVPIATLSRKKGNPEISKQKTGPATVFSDTEEQKIVDWILFRAQRGLPVTKTELLDSIQQYVKKSKETPFIDSQPSRHWYEGFRKRHPQMSIRKPQHLTHSRAAVTGDDLKDWFDEQAKYLTEKINGDSFYENFQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00932430; iTF_01393438;
- 90% Identity
- iTF_00932430;
- 80% Identity
- -