Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067297.1:1523373-1529000[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.031 3 9.1 0.4 1 23 105 128 105 129 0.95

2 15 0.048 4.5 8.5 0.0 2 23 154 176 153 176 0.95

3 15 0.08 7.6 7.8 2.2 2 23 199 220 198 220 0.96

4 15 0.62 59 5.0 0.0 1 23 224 246 224 246 0.83

5 15 0.059 5.7 8.2 4.7 1 19 251 269 251 272 0.91

6 15 0.05 4.7 8.5 1.0 2 23 282 304 281 304 0.93

7 15 1 1e+02 4.3 1.9 1 19 441 459 441 464 0.93

8 15 0.23 22 6.4 0.0 2 23 491 513 490 513 0.96

9 15 0.76 73 4.7 2.2 1 23 561 583 561 583 0.89

10 15 2.7e-05 0.0026 18.8 2.8 1 23 588 611 588 611 0.97

11 15 0.013 1.3 10.3 1.6 1 23 617 640 617 640 0.96

12 15 0.01 0.96 10.7 0.7 2 23 648 670 647 670 0.96

13 15 0.0017 0.16 13.1 1.1 1 23 676 698 676 698 0.97

14 15 0.0072 0.69 11.1 0.4 3 23 706 727 704 727 0.96

15 15 3.3e-05 0.0032 18.5 0.5 1 23 733 756 733 756 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.031	3	9.1	0.4	1	23	105	128	105	129	0.95
2	15	0.048	4.5	8.5	0.0	2	23	154	176	153	176	0.95
3	15	0.08	7.6	7.8	2.2	2	23	199	220	198	220	0.96
4	15	0.62	59	5.0	0.0	1	23	224	246	224	246	0.83
5	15	0.059	5.7	8.2	4.7	1	19	251	269	251	272	0.91
6	15	0.05	4.7	8.5	1.0	2	23	282	304	281	304	0.93
7	15	1	1e+02	4.3	1.9	1	19	441	459	441	464	0.93
8	15	0.23	22	6.4	0.0	2	23	491	513	490	513	0.96
9	15	0.76	73	4.7	2.2	1	23	561	583	561	583	0.89
10	15	2.7e-05	0.0026	18.8	2.8	1	23	588	611	588	611	0.97
11	15	0.013	1.3	10.3	1.6	1	23	617	640	617	640	0.96
12	15	0.01	0.96	10.7	0.7	2	23	648	670	647	670	0.96
13	15	0.0017	0.16	13.1	1.1	1	23	676	698	676	698	0.97
14	15	0.0072	0.69	11.1	0.4	3	23	706	727	704	727	0.96
15	15	3.3e-05	0.0032	18.5	0.5	1	23	733	756	733	756	0.91

Sequence Information

Coding Sequence: ATGTCACATGATGCCTCTCAAATTCAATGGGTACAGTTTCAGTTGTTTCATCTGCTGCAACGAGTTCAACAGATTCAAGAGTCTATTGGAGGATATGAATTTCCGCTGCAGGAACTACGTACTGCCCGTACCGCGCAATCAGAAACgaattttgacaaaaatatcACAGACGGAAACGCGCAAGATCCAGACGTAAGCACAGACAAATCTAGACTTAAAAGGGGACAAGAGTTATCTAAGCATAGAAAGAACATGCGCGAGATACTAGTCAACTCAAACGCAACGCCGATACGTTGTCACGGTGGGAAAGGGTACGCGTGCAGCTTCTGCGATGACCAATATCCGGATCCGGCCGATCTTAAACAGCACACCATCCGCTCTCATCACAACAACGTAATCAAATTTATGAAAGGAAAGGACTTGTACAGGTTTCACGTTAAGCTAGACATAACGGACCTGCGTTGTAGGATTTGTGATGGCACCATCGCCAACTTGGAACAGCTCATAGAGCATTTACGTAACGCTCACAAAAGGACCATGTACATGgacattaaaaatcaaatattaccATTTAAATTCGACGGCGAAAGTTTGAGATGCTTCATGTGTTTGAACAAGTTCAACAAATTCAAGACGCTGCAGGAACATATGAATATACACTACAGGAACTACATCTGCGAAGTCTGCGACGCGGGCTTTGTGAACCGCGGCATCATGATCCAGCATTCCGAGAGCCACAAGTACGGGACCTTCACCTGCGACCATTGTCCCAAAGTCTTCAACACCTTAAGGAAGAAGAAGTCGCATGAAAAGTGCATACACACGCATTCGAACATGCTAAACAAATGCGGTTACTGTAGCGAGAAGTTCAAGGATTACCGGAAGAAGGAGATACATATGACGGAAGTACACGGCCTGCCGTCTCAGTCACTGAAGTGTGAGGCCTGCGAGAAAACCGTTTGTCGGGCAGAAGCATCTGAATGTTCACATAAAAAGGGTGCACCTGTTAGAGCGTCGTCACAAATGTACGGAGTGCGAGATGAGGTTCTTCTCGGTGTCGGAAATGAAGATACACATGCTGAAGCATACGGGAGTTTAACGCGTACAGAAAACGCTAAGCGCAAAAGTCAAATCCAACACGAAAAGTTCGAATCTGAAGAAAAATCAGTTATCCAGGAAATATCTGTGGATCTGGATAGTTCTGGGAGATCGGAAACCAGAATAAAGCTCGGCGTGGAATTGGAAAAGCACCGGACCAACGCGAGGGAGGTGCTGATGTGGTCCAACGCGACACCGATACGCTGCAAAGGTGGCGTTGGATACGCCTGCTGCTTCTGCACCGAACAGTATCCCGACCCCGGCGATTTGAAACTGCATTGCATACAAATGCACGACCGTTCCGCAATATCCAACTTCATGAAAGGCAGAGACCTGGACGGCTACCACGTAAAGCTAGATGTGACAGCGCTCCGCTGCAAGGTTTGCGAACTACCGGTCGAAACGTTGGAATCGATGATGGATCATTTGAAGGTTGCACATGGCAAGAAAATCGATACAACCATAAAGAACCACATGATACCGTTCAAATTCGAAACGGATCACCTGCAGTGTTGCGTTTGCATGAACATCTTCCATAAGTTCCAAGCGCTTCAGGTGCACATGAACAACCACTACAGGAATTATGTCTGCGAGAGCTGCAATGCTGGTTTCGTGAACCGACATATGCTccgttgccatagtaacggccATAAGATCGGAAGCTTCACTTGCGACTATTGCTCCAAAGTGTTCAGGACTGTCCGCACGCTGAAGCACCACGAGCGGATTGTGCATTGCTCGACCATGCCGCACAAATGCGGCTACTGCAGCGAACGCTTTAAGGAGAACTGGAATAAGACCGAACACCTCGCGAGAGTGCATGGAGTGCGGGGGCCCGTGGTAAAGTGTCAGGCGTGCGAAAAGACCTTCGGATCACAACAGAGGTGGCAGCTGCACATGAAGAGGGATCATTTAATGCAGAGGCAGCACAAGTGCGGCCGGTGCGAGAAAGCTTTTTACGCTAAACGCGAGCTGATAGACCACATGGTGAAACACACCGGCTTGAGAGAGTTTGGATGCGAGGCGTGCTCTAAATCGTACGGGAGAGTGAAGACTTTGAAGGAACATATCCGGAGGCTGCATCCGGATGATGATAGATTCAGATGCGTCCATTGCGGTTGGATGTTCGTGCAAAGCGCAATGTTGAAGAAGCACGTCGCAGATAAACACACGAATAGTTCATCCTAG
Protein Sequence: MSHDASQIQWVQFQLFHLLQRVQQIQESIGGYEFPLQELRTARTAQSETNFDKNITDGNAQDPDVSTDKSRLKRGQELSKHRKNMREILVNSNATPIRCHGGKGYACSFCDDQYPDPADLKQHTIRSHHNNVIKFMKGKDLYRFHVKLDITDLRCRICDGTIANLEQLIEHLRNAHKRTMYMDIKNQILPFKFDGESLRCFMCLNKFNKFKTLQEHMNIHYRNYICEVCDAGFVNRGIMIQHSESHKYGTFTCDHCPKVFNTLRKKKSHEKCIHTHSNMLNKCGYCSEKFKDYRKKEIHMTEVHGLPSQSLKCEACEKTVCRAEASECSHKKGAPVRASSQMYGVRDEVLLGVGNEDTHAEAYGSLTRTENAKRKSQIQHEKFESEEKSVIQEISVDLDSSGRSETRIKLGVELEKHRTNAREVLMWSNATPIRCKGGVGYACCFCTEQYPDPGDLKLHCIQMHDRSAISNFMKGRDLDGYHVKLDVTALRCKVCELPVETLESMMDHLKVAHGKKIDTTIKNHMIPFKFETDHLQCCVCMNIFHKFQALQVHMNNHYRNYVCESCNAGFVNRHMLRCHSNGHKIGSFTCDYCSKVFRTVRTLKHHERIVHCSTMPHKCGYCSERFKENWNKTEHLARVHGVRGPVVKCQACEKTFGSQQRWQLHMKRDHLMQRQHKCGRCEKAFYAKRELIDHMVKHTGLREFGCEACSKSYGRVKTLKEHIRRLHPDDDRFRCVHCGWMFVQSAMLKKHVADKHTNSSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -