Taea024134.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- -
- Assembly
- GCA_033220335.2
- Location
- CM067296.1:4449295-4473186[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.055 5.3 8.3 1.2 1 23 259 282 259 282 0.97 2 11 1.2 1.1e+02 4.2 0.2 2 23 291 312 290 312 0.93 3 11 0.001 0.097 13.8 1.5 1 20 344 363 344 365 0.93 4 11 0.014 1.3 10.2 1.8 2 21 372 391 372 392 0.91 5 11 0.0001 0.0096 17.0 0.2 2 23 405 426 404 426 0.94 6 11 0.00011 0.011 16.8 0.3 1 23 431 453 431 453 0.98 7 11 4e-05 0.0038 18.2 5.0 1 21 462 482 462 487 0.94 8 11 0.0017 0.17 13.1 1.6 1 23 495 518 495 518 0.87 9 11 0.0024 0.23 12.6 0.3 1 23 524 547 524 547 0.96 10 11 0.015 1.4 10.1 0.4 3 19 561 577 559 578 0.89 11 11 0.0051 0.48 11.6 1.2 1 23 591 614 591 614 0.98
Sequence Information
- Coding Sequence
- atggaaattaatataaacatcgaGGGGTTCAACGTGAACGGAATATGTGTCGGCTGTTTGAGTTACAACCGGAAGATGTTTTACCATGAggaagttattaatttttttaaaatatgggCGAAAATTGATGTTCCAGACGGACTAACGATCCAGGTGTGCTGGGAGTGCCTCGCTGCTGTGAGCTCGGCAGTGCGATTCCGTAACAAGATCCTCTCTGCTTATAATATACTCATAGACTACTCACGGAAGCACACCTTTCTCAACTGCCCAAACGATTTATCCAAGTACACACTGAGCCGGCTGTCACCGTcaagcccagcagtggactcctCGCTCAGACCGATCAAGCAGGAGGAGCAACCGGAAATAGACATAAACGTGGTGAAGATAGAAACTGACGATGATAAAAACGATATAGATGACTTCGATGCTCGTAGTACACATTCGGAGTTTCTGAACGCTCCAAGCCCTAAAGAGGAGAGCGTCGCCGGGGTCAACGACCCCGCTAGCAAGGGCGAGGAGGAATCCGAAGACGACGTACAGCTCTCCAAGCTAAAGGCGAAGAAGAGGAAAGGCAGAAGGAGTAAGAAGGGGAGAAGTGTGAAGAAGTTGAAAGAAGAATTAGAGGAGAGAGTAGCAGAAGAGCCGACGAAGTGCAGCCGCAAACTGCAGAACCTGCCGGAGGAGCTCGTCGAGCTGGTCACGATGACCGAGGAGGAGATGTGGAAGGTCAGGGCCGAGGACGTCGCGAGGAGGGAGTTCGCGTCACTCAAATACAAGTGCGACAACTGCATTATCAGCTTCAACACGGAGAAGCTTATGAACTACCATTTGAACAGCAAACATGCCGCGAAGGGAGACGGCGACATCCAGTGCGACGTGTGCAAGGCTTACCTGGTGACGCGCGACAACCTGcccgcccaccgcgcccaccacCGCGCCGCGTACCGCTGCCGCGCGTGCGCCGCGACCACCACCTTCAAGCAGGCGATGGTCGCCCACGAGTgcgcgcgccgctcgccgcccgacCACTCGTGCTCGTCGTGCGGCGCGAAGTTCAGTACAAAGTCCAAGCTGACTTACCACAGGAGCGTCTGCTGCCAGGAGAAGCCGCAGTGCGACTGCTGCGGCAGGGTGTTCGCTAACAAGATGACGCTGAAGTATCACCTGAAGAAATCACCGCAGAACAAGCCGAAGGAGAAAGTACTAATACCGTGCAAAGGATGTGACAAGGTCTTCTTCTCGAAGAAGAGCTACAGAGCTCACGTGGTGATCCACAACGGGCTGACGTACCCGTGCCCGATCTGTGGCAAGCTGTTCCAGTGGAAGCGGAACCTCGCGCGGCACACGCGCAACCACCGCGAGCGCGACGCGGGCGCGCTGCACGAGTGCAGGGACTGCGGCAAGAGCTTCTCCAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGCGGCACGTGCCCGAGGAGGCGTACGTCCACGCTTGCAACTACTGCGGCAAGAAGTTCGCCACGAAATGGTGCATGGTGGACCACGTGGACTGGGACCACCTCAAGCTGATCAAGTACCAGTGCAGCGTCTGCTTCAAAcCGTTCAAAACCGCGAAGATAATGGTCGCCCACATGAACAACATACACGAGGGCAAGAAGAACAAGGAGCCGGAGGGCGAGCACCTCTGCGAGATATGCGGCAAGTCTTACAAGACGGTGAAGAGGCTGAAGGGCCACGTGTGGGCGATGCACACGAACCGCTCGTCCAGCAAGAGCTTCAAGTGCAAGCTGTGCCCGGCCACGTTCACGTGGCAGACATCCATATACAAGCACATGAAGATGATGCACGACGTCTGCAAGAGGAGCAAGCAGTCAAGATCCGTACCGTCGGTGAAGAAACAGGAGCCCTACCCGGACATGGAGCTCGCGAACAGGATGCAGTACTTCCAGCAGAGCATCGCGAACAATCTGGTGCAGAACATGGTGCAAGCGCAGCCGGCGCCGCTGAGCGTCGCGCCCAGCATTGTGTGA
- Protein Sequence
- MEININIEGFNVNGICVGCLSYNRKMFYHEEVINFFKIWAKIDVPDGLTIQVCWECLAAVSSAVRFRNKILSAYNILIDYSRKHTFLNCPNDLSKYTLSRLSPSSPAVDSSLRPIKQEEQPEIDINVVKIETDDDKNDIDDFDARSTHSEFLNAPSPKEESVAGVNDPASKGEEESEDDVQLSKLKAKKRKGRRSKKGRSVKKLKEELEERVAEEPTKCSRKLQNLPEELVELVTMTEEEMWKVRAEDVARREFASLKYKCDNCIISFNTEKLMNYHLNSKHAAKGDGDIQCDVCKAYLVTRDNLPAHRAHHRAAYRCRACAATTTFKQAMVAHECARRSPPDHSCSSCGAKFSTKSKLTYHRSVCCQEKPQCDCCGRVFANKMTLKYHLKKSPQNKPKEKVLIPCKGCDKVFFSKKSYRAHVVIHNGLTYPCPICGKLFQWKRNLARHTRNHRERDAGALHECRDCGKSFSSRDCYNNHMRLSKRHVPEEAYVHACNYCGKKFATKWCMVDHVDWDHLKLIKYQCSVCFKPFKTAKIMVAHMNNIHEGKKNKEPEGEHLCEICGKSYKTVKRLKGHVWAMHTNRSSSKSFKCKLCPATFTWQTSIYKHMKMMHDVCKRSKQSRSVPSVKKQEPYPDMELANRMQYFQQSIANNLVQNMVQAQPAPLSVAPSIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495314;
- 90% Identity
- iTF_01495314;
- 80% Identity
- -