Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067297.1:3947096-3952093[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 3e-05 0.0029 18.6 0.9 2 21 169 188 168 189 0.94

2 10 0.011 1 10.6 0.4 1 23 222 245 222 245 0.97

3 10 8.3e-06 0.0008 20.4 1.4 2 23 251 272 250 272 0.95

4 10 0.02 1.9 9.7 2.8 2 21 276 295 275 296 0.93

5 10 0.006 0.57 11.4 1.1 2 23 336 358 335 358 0.94

6 10 0.28 27 6.1 0.4 3 23 366 385 365 385 0.94

7 10 0.00095 0.09 13.9 1.2 1 23 391 413 391 413 0.98

8 10 0.00069 0.066 14.3 0.7 1 23 419 442 419 442 0.97

9 10 0.014 1.3 10.2 0.5 1 23 451 474 451 474 0.93

10 10 0.0001 0.0098 16.9 3.8 1 23 483 505 483 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	3e-05	0.0029	18.6	0.9	2	21	169	188	168	189	0.94
2	10	0.011	1	10.6	0.4	1	23	222	245	222	245	0.97
3	10	8.3e-06	0.0008	20.4	1.4	2	23	251	272	250	272	0.95
4	10	0.02	1.9	9.7	2.8	2	21	276	295	275	296	0.93
5	10	0.006	0.57	11.4	1.1	2	23	336	358	335	358	0.94
6	10	0.28	27	6.1	0.4	3	23	366	385	365	385	0.94
7	10	0.00095	0.09	13.9	1.2	1	23	391	413	391	413	0.98
8	10	0.00069	0.066	14.3	0.7	1	23	419	442	419	442	0.97
9	10	0.014	1.3	10.2	0.5	1	23	451	474	451	474	0.93
10	10	0.0001	0.0098	16.9	3.8	1	23	483	505	483	505	0.98

Sequence Information

Coding Sequence: ATGAGCCGGCAAATAGACATAAAAGCCTTGGTTTCGCACGTAGTGCGCGGTGACGGCATAAATAAATGTAGAATATGTATGGGTGATACCACGGAAGGTCAGGTGTTTCTCGGCGACACCGTAATGATGGACGGAGATCAACCGGTGACCTTATCAGAGCTATTGGAAACTATAACAGGAGTTGAGATGCCGATGAGCGAGGACCTGCCATTCAACCTGTGCTCAGCTTGCTCGCTCTGTGCCCTAAGAGCAGGCCAATTCCGGACGATCTGCAGACAGGCGGCCCACAAGTGGGACTCCATGTTGCAACTACTAAGCACTATACCCGAAGTCGTGAGCAAAACCAAAACCTTATTCGCAATCGTCGAGATGGATCAGATGATTCTGTTCGATGATTGCGATGATTTACCCAACGCGAAATTAGCCGCCGATAAACTTAATCTCAGGTTGAAACCGGAAATTGAAACAGAGGATGTTAACGAGACAGGAAAAAAGCAGCGGTGCCAGTGCCCAGATTGTGGCAAGAAGTTTGTGTACGCTCAGCAGTTGTATCAGCACCTGAAGGAAGCTACGGATTTCAAGAGAGCGTGTTACGTATGTGCGAAAATTATGAGCAGAGATGAGTTAGTGTTACATTTAAACGAAGACCACAATCATGAGCCGTATGCCTGCAAAAAGTGCCCTGCCCTGCTACGATCCTACAGCCAGTACGCTCGACATTTACAGAAGGCCCACTCACGGGGCTCGTGCACTTGCGGCGAGTGCGGGAGAAGCTTCAGAACATCCAACGCTTTCCGCGCCCATCTCTCCATTCACTCCATCAAAACTTGCCCCGGCTGCGACAAGTTGTTTCGCAACCAAACCTGCTATTTGTACCACACGAAAAAGTGCTGCAACTTAGACAGTAAACGAGAAGCGTATAAAGGCAGGATTGTTGAAGTGAAGAACCGGAGGAGCGACAAGAGCATCAAAGTCGGATTGCGCGGGAGGACAAACAAAGAGTGCATTTGTGACTACTGCAAGAAGAAATTCGCAGGAAAGAGGTTCGTTTCCGCTCACATACAAATAGTCCACATGAAGAACACGCACCGGCCCTGCGTGTACTGCGGGAAGTACCTCGCGGCGGCGCACATGACGGAGCACATGAAGAGGCACGAAGAGACCAGGTTGTACAAATGCGGACACTGCGGCATCGTCTTGAAGACCAAATTGGGTTACAGTCAGCATTTGCGTCTTCACAGCGGCGAGCGGCCGTACGCCTGTCAGTACTGCGGCGAAACCTTCTCGGCATCTTCGAGGAGGTCGGAGCATATACGCAAGACGCACAGGAGTTCGGAGATCGTGCTCAAGCACGCGTGCGAACGATGTCCGGCAAAATTCCGGCTCCCGTACAGACTGAGGAAGCATGTGGCTTCTGTGCACAACGCGGATAAAGATGACTCGCTGTTCGAATGCTCAGAGTGCCACGAGAAATTCAGCAGCGCCAGGGGGCTGCTGCATCACAGCAGGACCCACCAGCACCTATTATCTGGTGCAAGGAAGCCGACGAACGAAATGAAATGTAAGGTGTTCAGCGAGCCGGTGAAGAACGGTAGTGCAATATAA
Protein Sequence: MSRQIDIKALVSHVVRGDGINKCRICMGDTTEGQVFLGDTVMMDGDQPVTLSELLETITGVEMPMSEDLPFNLCSACSLCALRAGQFRTICRQAAHKWDSMLQLLSTIPEVVSKTKTLFAIVEMDQMILFDDCDDLPNAKLAADKLNLRLKPEIETEDVNETGKKQRCQCPDCGKKFVYAQQLYQHLKEATDFKRACYVCAKIMSRDELVLHLNEDHNHEPYACKKCPALLRSYSQYARHLQKAHSRGSCTCGECGRSFRTSNAFRAHLSIHSIKTCPGCDKLFRNQTCYLYHTKKCCNLDSKREAYKGRIVEVKNRRSDKSIKVGLRGRTNKECICDYCKKKFAGKRFVSAHIQIVHMKNTHRPCVYCGKYLAAAHMTEHMKRHEETRLYKCGHCGIVLKTKLGYSQHLRLHSGERPYACQYCGETFSASSRRSEHIRKTHRSSEIVLKHACERCPAKFRLPYRLRKHVASVHNADKDDSLFECSECHEKFSSARGLLHHSRTHQHLLSGARKPTNEMKCKVFSEPVKNGSAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01115951;
90% Identity: iTF_01496837;
80% Identity: -