Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067295.1:5370629-5373237[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.9e-06 0.00047 21.1 0.7 1 23 291 313 291 313 0.98

2 12 0.78 75 4.7 0.2 5 14 371 380 369 384 0.86

3 12 0.00016 0.015 16.3 0.7 1 23 399 422 399 422 0.97

4 12 0.00029 0.027 15.5 1.3 1 23 426 448 426 448 0.98

5 12 0.97 93 4.4 1.6 2 23 470 492 469 492 0.91

6 12 0.011 1 10.6 1.0 1 23 496 519 496 519 0.97

7 12 0.17 16 6.8 0.2 2 23 542 564 541 564 0.93

8 12 0.00044 0.042 14.9 2.3 1 23 574 596 574 597 0.95

9 12 0.0099 0.94 10.7 1.7 5 23 616 634 613 634 0.93

10 12 0.015 1.4 10.1 0.5 1 23 640 662 640 662 0.94

11 12 0.57 54 5.1 2.8 1 22 668 689 668 692 0.90

12 12 4.7e-06 0.00045 21.1 1.1 2 23 752 773 751 773 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.9e-06	0.00047	21.1	0.7	1	23	291	313	291	313	0.98
2	12	0.78	75	4.7	0.2	5	14	371	380	369	384	0.86
3	12	0.00016	0.015	16.3	0.7	1	23	399	422	399	422	0.97
4	12	0.00029	0.027	15.5	1.3	1	23	426	448	426	448	0.98
5	12	0.97	93	4.4	1.6	2	23	470	492	469	492	0.91
6	12	0.011	1	10.6	1.0	1	23	496	519	496	519	0.97
7	12	0.17	16	6.8	0.2	2	23	542	564	541	564	0.93
8	12	0.00044	0.042	14.9	2.3	1	23	574	596	574	597	0.95
9	12	0.0099	0.94	10.7	1.7	5	23	616	634	613	634	0.93
10	12	0.015	1.4	10.1	0.5	1	23	640	662	640	662	0.94
11	12	0.57	54	5.1	2.8	1	22	668	689	668	692	0.90
12	12	4.7e-06	0.00045	21.1	1.1	2	23	752	773	751	773	0.97

Sequence Information

Coding Sequence: ATGGAGCAGCAAAACAATTTGATTCAAGAAAGCAAGGTTTCCTGTGatagtgtaaataaaacaagtataaAACAAGAAATTCATTCAGAAATTAAAGATGATGTCCAGGTTAAAACTGAGCCAGAATACAATGATCATTCAACTTGTGAAAATGTGTTTGAAAATATACAACTGCATGTTAAACAGGAATTCACACAGTCTCAGAGCATTGAAAGGCATGGGTATAATGATGGGCATGAAACATATGATATAGCAATTGAAAAAGATGATGCATCAAACTGTAAGATAGAGCAAGATACAATAACCAATATGTATGATGATGACATAGAAATTAAACAAGAAGATGAGATAGATGATAATTCATGTGATTATTCAATTTTCGAAGATTCACAAAGTATGAATAGTGATGAGGCAAAAGCTTTGAATAATGTTGAGGCATGTCTGCAGGAGGATATCAAGATAAAGTCCGAGAGTGAGTTATTTGAGATAAATCAAAATCATGAAATGgaaaaagtaaatgtaaaagATGAAATGGAATTAACAGTGACAGAAACTCATCTTATatctaataaactttttaacacCACATCCACAGTAACAAATTCAAATGATGGTCTCATTGAATCGCAAACTACAAAGACATTAATAATGGAAATACTACCAATGCAACATACACATGGTGTCTCACTAAGTAAAATTGATAATCCTGAAGAAATACTCCCCACTTCCTATACACATAATGAATGCAATGAAATGGATTATGATGACACTTTTCAATTGAATTCAATTACTGGTAATGTGATGTCATTAGAGCAAGAGGCTTATGGGCTTTTAGAAGCGAAAAGTAAAATTGGTGAATTAGATCGGCCATATGTATGTCTCAAATGTCCGAAAGCGTACAAAAGTGCCTCGTCTTTAAGAAAACACAAGAATGTCCACGCAAGTATTGCAAAACGTGCTATGGGGATTATAAAGGGGCTAAAGACTAGAATGGCTAAGAAGAAACTGAAAGAGGAGGACAAGATATACTCTCCAAAGTTAAAGAAAGAAGTCAAAATTGAGAATGTAATATCTTTAGTTGACAATGTAAAGAAAGAGGGTTATGAATGTACGTGCGGTAAGGTTTTTCGACGCAGGAGTCGAATGGAAACGTGTTTGCGATCACACAATATGTGTTCCGATCTAAATTCGTACTTTCCATGTGTTACGTGTAGTAAGCAGTTCAAAGATAAGGAAGAACTTGCGTTGCATCGCAAAAGATTGCACAGAAAGAGGTTTCCGTGCAAATTTTGCCCTACAGATTATAACACGCGGAAAGAACTCTTCAAGCATTTACAGATACATCAAAAAGTTCAAGTCATGGAGTATAAAGTGTTATCAGAAGTGGTCAAAGGAAAACAGAAACTGAAATGTTTCATGTGCTCGAAGACTTGTTTGGAGTTGTCGGAGCTGAAGTCTCATGTAATGGACGATCACAAGGAGCCATACATATGTCCACATTGTAACGGTACTTTTTCGAAAATCATCGATTTCGGTAACCATACAAAAACGGATCACCCAGAGGTTGAAGGACAATCGGTATTGGATGTCCTTGAAGCATTCTCTAAGTTGGTGAAGGCCTGGAAATGCGAGGAATGTGAAGTTCAGTTCCACGAGGCCGACAAACTCGCGCTTCACCAGATAGAAAAGCACAGTCCTGATCTAAAAATCGAACCGCAGTTCCAGTGCATAGATTGTAGAAGAGTGTTCATAACTCAGAAAGGATTGACGTCGCACCGACGTGTACATCATAGCACAGAGAATTTGGAGGATCCGGAGACGGTCGACAACACGGTCATGTGTATAGAGTGTAGGAAGATTTGCAGAGATTCGAACGCGTTGACATCACACATGCGGCTACATTCGATGGAACGGAAGTATCCGTGCAAGTTCTGCGACTTTAGATTTGCGACACCCGAGAAGAGAAAAATCCATGCGGAATTGCACACGGGTGATATGAAATTCGTGTGCTTTATATGTGAGTACCAGTGCACCTCCGAGAACCGGCTGAAACAGCACAAGTTGTCGGCCAAGCACCTGAACATGAAAGATTTTCTGGCAACTGGTAAACCGTTAGAGAAAGAGAAACAGTCCACATCTAAGAAGGTTAAAACGGACGATTCCGTTGAGAAAGATGAGTGGGTAGTCGTGAAAGGAAAGAAGGCGGAAGGGGAGAGTGGAGAAGAATCCTCGTCTACTGCAGGCGAGGGATCGACGTGTGATATTTGCGGCGAGACATTCAAAACTGAATCCAAAATGTTGAAGCACCAGAACACACATCCGTTTATAGAAATACCCAACGACGATAAGCCCACcaggatattttttaaatag
Protein Sequence: MEQQNNLIQESKVSCDSVNKTSIKQEIHSEIKDDVQVKTEPEYNDHSTCENVFENIQLHVKQEFTQSQSIERHGYNDGHETYDIAIEKDDASNCKIEQDTITNMYDDDIEIKQEDEIDDNSCDYSIFEDSQSMNSDEAKALNNVEACLQEDIKIKSESELFEINQNHEMEKVNVKDEMELTVTETHLISNKLFNTTSTVTNSNDGLIESQTTKTLIMEILPMQHTHGVSLSKIDNPEEILPTSYTHNECNEMDYDDTFQLNSITGNVMSLEQEAYGLLEAKSKIGELDRPYVCLKCPKAYKSASSLRKHKNVHASIAKRAMGIIKGLKTRMAKKKLKEEDKIYSPKLKKEVKIENVISLVDNVKKEGYECTCGKVFRRRSRMETCLRSHNMCSDLNSYFPCVTCSKQFKDKEELALHRKRLHRKRFPCKFCPTDYNTRKELFKHLQIHQKVQVMEYKVLSEVVKGKQKLKCFMCSKTCLELSELKSHVMDDHKEPYICPHCNGTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLVKAWKCEECEVQFHEADKLALHQIEKHSPDLKIEPQFQCIDCRRVFITQKGLTSHRRVHHSTENLEDPETVDNTVMCIECRKICRDSNALTSHMRLHSMERKYPCKFCDFRFATPEKRKIHAELHTGDMKFVCFICEYQCTSENRLKQHKLSAKHLNMKDFLATGKPLEKEKQSTSKKVKTDDSVEKDEWVVVKGKKAEGESGEESSSTAGEGSTCDICGETFKTESKMLKHQNTHPFIEIPNDDKPTRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01496090;
90% Identity: iTF_01496038;
80% Identity: -