Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067297.1:6040952-6043953[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0026 0.25 12.5 1.5 1 23 244 266 244 266 0.98

2 10 0.91 87 4.5 0.3 3 23 291 312 289 312 0.92

3 10 0.00069 0.066 14.3 0.5 2 23 334 355 333 355 0.94

4 10 0.00073 0.069 14.2 1.3 1 23 359 381 359 381 0.98

5 10 0.0035 0.33 12.1 0.3 1 23 388 411 388 411 0.95

6 10 8.8 8.4e+02 1.4 0.2 3 23 419 440 417 440 0.82

7 10 5.4e-05 0.0051 17.8 1.7 1 23 446 469 446 469 0.97

8 10 0.00012 0.011 16.8 1.4 1 23 475 497 475 497 0.98

9 10 4.1e-06 0.00039 21.3 1.2 1 23 503 525 503 525 0.99

10 10 3.4e-06 0.00033 21.6 3.3 1 23 531 553 531 554 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0026	0.25	12.5	1.5	1	23	244	266	244	266	0.98
2	10	0.91	87	4.5	0.3	3	23	291	312	289	312	0.92
3	10	0.00069	0.066	14.3	0.5	2	23	334	355	333	355	0.94
4	10	0.00073	0.069	14.2	1.3	1	23	359	381	359	381	0.98
5	10	0.0035	0.33	12.1	0.3	1	23	388	411	388	411	0.95
6	10	8.8	8.4e+02	1.4	0.2	3	23	419	440	417	440	0.82
7	10	5.4e-05	0.0051	17.8	1.7	1	23	446	469	446	469	0.97
8	10	0.00012	0.011	16.8	1.4	1	23	475	497	475	497	0.98
9	10	4.1e-06	0.00039	21.3	1.2	1	23	503	525	503	525	0.99
10	10	3.4e-06	0.00033	21.6	3.3	1	23	531	553	531	554	0.96

Sequence Information

Coding Sequence: ATGGCTGTCACAATAGTTACAAATAGCAAGGGTCCAATTGTGGATCCAGCTTTGTGTCGGTGCTGCCGCTCAATTAAGAAATGCCGTCTCTTGTCTTCCGAATATGAATGGATGGGGACCAAGGAAATTTACTCAGACATGCTAATGGATTGTTTTGGTTTACTTCTCTCTCATTTAGACGGAGATAATAAGGATAGTTGCATATGTGCTACATGCGTTTCTAGGCTCCGTGAAGCTTATGCCTTTCGACAACAGGTGCTACAGTCTGAGGAGGTGTTCCTTAAAGCCAGGCTTGAAGAAAACAAGGATGATGAAGACTCGAAAATTATGGTTGAAGTGAAAACTGAACCAACGGACTTGGTTGATTCCGATACGCACATGGATGATAGGGATGATTTGACAACAGAGCAAAATGATCTAAAACCCAATTTGAATTTATCTGACATAGATGGTAAAGAACAACCATTGCGGAAAGTAGCTAGACGGAGATCAACTCGAACAAAACATGTAAAGGAGGGCTCATTTAAAGGGGAAGTTGTGACTAGGATTAGAGGGTTAAGGCTGAAAATGGACCGGATGTTGGACGTGCCAGATACTCAGAAGAAAACAAAACCTATATCTTTAAAAGTAAAGAAACCGATTGATGACCACGAGCACATGGCCTATGCGAATACGGTAATAATAGTACACAACTCCTACGTCTGTCCGTTCCACAATAGAGTAAGCAATTACTATTGCTACTACTGCAAAGATCAGTTCACGAACCCCAACGAGCTCCGTGAACACACCCTGTCCCACGACCCAATAGAGATGTTCGAGAGCATGACAGAGAACAAGAAAGTACCTAAAATCGATATAACGAGAATCGATTGTAGACTGTGTAAAGAGAAAATCTTTAATTTGGAAACATTGAAAGAGCACCTCACCAGCGCCCACGGGAAAGTGTTTCACCCCATCACTAACGAGTTCTTGAAGTTTAGGTTATCGTTGGACAATTTGACTTGCACAGAGTGTAACAGTTCCTTTCCTTATTTCGATTTGTTGAAAAAGCATATGGTGGACCATTTCGGTACGTTTATATGTGATATGTGCGGTGCGTGTTTTTTAGAGCAGAACTCGTTGCGGACTCATATAAAGACTCATAGCAAAGTGGAAGCCAGTTTTCCATGCGAGATATGCGGTAAGAATCTCAAATCGAAGTACAGCAGGTACTTGCACGTCGCTACGGTACACGAAAAGAAACCTACCGTTAACTGCTACAAATGCGAGGCGAGTTTCCTCTCTTACGCATTGAGGAACAGACATCTGATCGAAGTGCACGGCGACAAGCGGACGTTCCCTTGCAAGCTATGCGACAAGGTGTATAACAGAAGGAAAACGCTCATGGAACACAATCGGAGGAATCATTTGAAGGTTTATCGGCATCAGTGTGACTTGTGTGATCAGAGGTTCTACCTGCCGTCCCGTTTGAAAGAGCACATGGCAACACACACGGGAGAGAGGAACTTCCGTTGCGAGTTCTGCGACAAGAGCTACCCTCGCCTGCAGTCCTTGCAAGAGCACCTCCGTTCGCACAGCAATGAGAGGCGTTACAAATGCGACATATGCAACTCTACATTCACACAGAACGGAAGTCTCAAGAACCATTTGAAGAGTCACCATTCGGGATATGAAGTTGAATCAaattataagtga
Protein Sequence: MAVTIVTNSKGPIVDPALCRCCRSIKKCRLLSSEYEWMGTKEIYSDMLMDCFGLLLSHLDGDNKDSCICATCVSRLREAYAFRQQVLQSEEVFLKARLEENKDDEDSKIMVEVKTEPTDLVDSDTHMDDRDDLTTEQNDLKPNLNLSDIDGKEQPLRKVARRRSTRTKHVKEGSFKGEVVTRIRGLRLKMDRMLDVPDTQKKTKPISLKVKKPIDDHEHMAYANTVIIVHNSYVCPFHNRVSNYYCYYCKDQFTNPNELREHTLSHDPIEMFESMTENKKVPKIDITRIDCRLCKEKIFNLETLKEHLTSAHGKVFHPITNEFLKFRLSLDNLTCTECNSSFPYFDLLKKHMVDHFGTFICDMCGACFLEQNSLRTHIKTHSKVEASFPCEICGKNLKSKYSRYLHVATVHEKKPTVNCYKCEASFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCDLCDQRFYLPSRLKEHMATHTGERNFRCEFCDKSYPRLQSLQEHLRSHSNERRYKCDICNSTFTQNGSLKNHLKSHHSGYEVESNYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01159952;
90% Identity: iTF_01496015;
80% Identity: -