Basic Information

Insect: Troides aeacus
Gene Symbol: -
Assembly: GCA_033220335.2
Location: CM067272.1:638113-640702[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00016 0.015 16.3 0.5 3 23 175 196 174 196 0.96

2 7 4.2e-05 0.004 18.2 4.0 1 23 201 223 201 223 0.97

3 7 1.8e-06 0.00017 22.5 2.8 1 23 229 251 229 251 0.98

4 7 0.0026 0.25 12.5 3.6 1 23 257 279 257 279 0.97

5 7 1.6e-06 0.00015 22.7 0.0 1 23 285 307 285 307 0.96

6 7 0.00069 0.066 14.3 4.4 3 23 328 348 327 348 0.98

7 7 0.00053 0.051 14.7 0.6 1 23 354 377 354 377 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00016	0.015	16.3	0.5	3	23	175	196	174	196	0.96
2	7	4.2e-05	0.004	18.2	4.0	1	23	201	223	201	223	0.97
3	7	1.8e-06	0.00017	22.5	2.8	1	23	229	251	229	251	0.98
4	7	0.0026	0.25	12.5	3.6	1	23	257	279	257	279	0.97
5	7	1.6e-06	0.00015	22.7	0.0	1	23	285	307	285	307	0.96
6	7	0.00069	0.066	14.3	4.4	3	23	328	348	327	348	0.98
7	7	0.00053	0.051	14.7	0.6	1	23	354	377	354	377	0.97

Sequence Information

Coding Sequence: atggatataacaaaattatgtcGAAGTTGTATGAAAGAAGTAGCTTCGTGGGAAAAAGAAAACTTCGATGTGCGAGCCGTGGAGATGTTTTGTTACTGTACAAATGTTGAgATAAGAGATGAAGACAAATTGCCAAAACAGTTCTGCTACGATTGCATTATTAAAATTGAGTCATCATACACATTTATTAAAGAAGCTCAAAATGTTAATGTAACATTGAAAAACATGGTATCAAGAAGTGAAACAAGTGTTATTGTTGAGTTAGAAAACTGTACAAAATTACTTGAAACAACATCAGCTCGGAGAAGCCATTTAAAACTGACCCTTCCTGATTACAAATTGTGTAGCACCTTCGATAACTCAAATGAAAAGGTTTtggataataattatgaatctAATATTGCTCCTGCTAAGAAACCATCATTAGATCCTGTAGATAATACCGCTCATGAAAAACCTGTAACCGACAAAGAAGTAAAAGACAAAGATGTGAATGATACtgaaagtgtaaaaaaaaacatctgtaCAATTTGTAGAAAGGGTTTTGTATCAAAAGTCTGGTTCTCTAAACATATGGAGAAAGAGCATTCCGGACAAAAATATAGCTGTACACATTGTACTAAAACTTTCAGCAAAGCTAGTCAGCTAAGTTACCACTCCGCCACACATTCTGATGAGCGCAAGTTCAGCTGTAGCACCTGTGGGAAGCAGTATAAACGACGGAAGCAGCTGAAAGTCCATGCACGTACACACTCTGATGAACGGCCATATGCTTGTGATAAATGTGAGAAGAGGTTCAAACTGAAGAGTGTGCTAAAATGTCACATGAAAGTGCACGACGGGCAGAAGCAGTACCTGTGCAGCTACTGCGGCTGGGCGTTCGCACAGGCGGGCAACCTGTCGGTGCACGTGCGGCGGCACACAGGCGCGCCTCCGCCCGGAGCTTCGTGTCGCGTCCGCGCTGCCCCCCGCGCCTTGCTCTGCGCGCACTGCTCGCAGCGCTGTCGTGACTCTAGCGCGCTGGCGcgacacacgcgcacgcacacgggCGAGCTGCCGTACCGCTGCTCCCGCTGCCCGCGCGCCTTCGCAGACAGCTGGAAACGCAAGACGCACCTGATGCGCGCGCACCGACTCGCGCTGCACGACATACCGCGCATGCGCCGCGACGGCACGCCGCTGCACCCGCACTACACTTGCTGA
Protein Sequence: MDITKLCRSCMKEVASWEKENFDVRAVEMFCYCTNVEIRDEDKLPKQFCYDCIIKIESSYTFIKEAQNVNVTLKNMVSRSETSVIVELENCTKLLETTSARRSHLKLTLPDYKLCSTFDNSNEKVLDNNYESNIAPAKKPSLDPVDNTAHEKPVTDKEVKDKDVNDTESVKKNICTICRKGFVSKVWFSKHMEKEHSGQKYSCTHCTKTFSKASQLSYHSATHSDERKFSCSTCGKQYKRRKQLKVHARTHSDERPYACDKCEKRFKLKSVLKCHMKVHDGQKQYLCSYCGWAFAQAGNLSVHVRRHTGAPPPGASCRVRAAPRALLCAHCSQRCRDSSALARHTRTHTGELPYRCSRCPRAFADSWKRKTHLMRAHRLALHDIPRMRRDGTPLHPHYTC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00180713;
90% Identity: iTF_01115916;
80% Identity: -