Taea023953.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- Znf296
- Assembly
- GCA_033220335.2
- Location
- CM067296.1:2682120-2687403[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0003 0.029 15.4 0.2 1 23 216 239 216 239 0.95 2 10 0.0067 0.64 11.2 0.6 1 23 273 296 273 296 0.95 3 10 0.14 13 7.1 2.4 1 23 300 323 300 323 0.94 4 10 2.5e-06 0.00024 22.0 2.8 2 23 327 349 326 349 0.96 5 10 0.0045 0.43 11.8 0.8 3 23 354 375 353 375 0.94 6 10 0.0026 0.25 12.5 0.6 2 22 389 409 388 413 0.92 7 10 2.8e-06 0.00026 21.9 0.3 2 23 422 444 421 444 0.94 8 10 0.00038 0.036 15.1 2.3 1 23 450 473 450 473 0.95 9 10 1.3e-05 0.0012 19.8 1.2 3 23 484 504 483 504 0.98 10 10 0.13 13 7.2 2.8 1 23 510 533 510 533 0.96
Sequence Information
- Coding Sequence
- ATGGGTGAAGTTATATGTCGTGGTTGTTTGAGCTTAGACCGTGATGTGGCTCCACTAGGTGATTTATCAGATCTCTTCTTCAAGCTGTCGAAACTAaaaAGATCTGAATATCATTTGATACAACTGTGCTGGGAATGCAGAGGTGTTCTGAGAAAGACATACAGGTTTCAGCAAAGAATTCAGCATGCACAGTTATTACTCCAACAAGCAGATTTGCAATTGACAATTTCAAAACCAACTACTTTGTCAACACTAGGCACCGTCTTAAGTGACAAAATCATAAGCATACAAGAAAACTATGATGCAGAATTTGAGCAGAAGGTACAATTAAAAATTGAGCATGGTATATGCAATATTGATTCTGAAcattatgatgataaattaaatgaaactacatacagtgatgatgatatgaaagaTTTAAAACAAGAAATTGATCTAGataaaaagattaataataCCACCAATCTGAACTTTAAAAATGATAAgagacattttaaatataaaaaacatgcaATTATCACCACCAATAGTTATGATTATGACAATCTAAttagatatttcattaaaaataatctgaATGATAAGGTAATTGAAGAAGTGCTGGACAGACGGATGTCCATAATGCATAAGAAGGAGCCATATTATGTTTGCAAAGTTTGTGGTGTGGGATTTCAGAAGAATATTGATTTGAAGAGGCATAAGATCATCAGGCATCCACCTCCAATGGGACCGTACAAATGCAGCGAGTGTCAGAATAGCGGAAGTATGCCCACTCTGAGAGATCTTCACATCCATTGGGAGAGTCATTCTGTCTACAAATGCAAGCTGTGCCCTGAAGTGTGCCGTTCAACACCGGAGGCTAACCGTCATCTGTTACAAGTTCACCAGCATACATACCAATGCATAGAATGTGGGCATACATTTGACGCTTACCGTGAATTCTTCCGTCATTACAAGGACCTTCACGAGAGGATGGTTTGCGATCACTGCGGGAAATCTTTCATCAAGAAGAAGTCCTTGGAAACTCATATAAAACGCAAACACCTTCCACCGATATGCTACACCTGTGGCCGGGTGTACAAGAGTGTCCACGCCCTGGAGTCTCACAGCAGGCTCAGTCATCCCGAGCTCCATTACGACCTTAGTAAGACGGAGCTCTCTTATTGCGTCGAGTGTAACAAACAATTCAACAGCGTCTATACTTACAGACGGCATCTCAGCACGGCGTATATACATAGACCGCCTAAGCCTGTTAGtATACCCTGTCCCGATTGTGGGAAAGTGTTCTCTAGGAAGATTTACATGAACAATCATTACAAGCTGTTCCACATGAAGAAGTCCAGGCACCATTGCGAGGTTTGTGATAAGTACTACGTGACAGCGTATGCACTACGCAACCATAGACTACGTGTCCACGAGAAGACCTACCCGCCCAAAGACAAGATATGCGAGATTTGTGGCAGGGGATTTAGtacGAATCGTGTGCTGATACATCACAGGCGCACACACACCGGCGAGAAGCCGCACAAGTGTTCGCAGTGTCCCGCCGCATTCGCTCAGCTCTGCGCGAAGAAATCACACGAGAGGTCGCAGCACAAGATCGGCTAA
- Protein Sequence
- MGEVICRGCLSLDRDVAPLGDLSDLFFKLSKLKRSEYHLIQLCWECRGVLRKTYRFQQRIQHAQLLLQQADLQLTISKPTTLSTLGTVLSDKIISIQENYDAEFEQKVQLKIEHGICNIDSEHYDDKLNETTYSDDDMKDLKQEIDLDKKINNTTNLNFKNDKRHFKYKKHAIITTNSYDYDNLIRYFIKNNLNDKVIEEVLDRRMSIMHKKEPYYVCKVCGVGFQKNIDLKRHKIIRHPPPMGPYKCSECQNSGSMPTLRDLHIHWESHSVYKCKLCPEVCRSTPEANRHLLQVHQHTYQCIECGHTFDAYREFFRHYKDLHERMVCDHCGKSFIKKKSLETHIKRKHLPPICYTCGRVYKSVHALESHSRLSHPELHYDLSKTELSYCVECNKQFNSVYTYRRHLSTAYIHRPPKPVSIPCPDCGKVFSRKIYMNNHYKLFHMKKSRHHCEVCDKYYVTAYALRNHRLRVHEKTYPPKDKICEICGRGFSTNRVLIHHRRTHTGEKPHKCSQCPAAFAQLCAKKSHERSQHKIG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495250; iTF_01495999; iTF_00249906; iTF_01115929;
- 90% Identity
- iTF_01495250; iTF_01495999;
- 80% Identity
- -