Taea021441.1
Basic Information
- Insect
- Troides aeacus
- Gene Symbol
- ZFY
- Assembly
- GCA_033220335.2
- Location
- CM067292.1:5975504-5985151[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.035 3.3 9.0 1.0 1 23 116 138 116 138 0.97 2 11 0.67 64 4.9 0.7 1 23 145 167 145 167 0.91 3 11 0.25 24 6.3 3.7 1 23 171 194 171 194 0.97 4 11 3.2 3.1e+02 2.8 7.9 1 23 201 224 201 224 0.93 5 11 0.034 3.2 9.0 1.3 2 23 229 251 228 251 0.93 6 11 2.4e-05 0.0023 18.9 0.2 1 23 264 286 264 286 0.96 7 11 5.3e-06 0.00051 21.0 0.5 1 22 292 313 292 317 0.94 8 11 2.9e-05 0.0028 18.7 0.2 3 23 327 348 325 348 0.96 9 11 7.6e-06 0.00072 20.5 0.6 1 23 354 377 354 377 0.96 10 11 1.5e-06 0.00014 22.7 1.4 1 23 386 408 386 408 0.98 11 11 0.00075 0.072 14.2 0.1 1 23 414 437 414 437 0.96
Sequence Information
- Coding Sequence
- ATGGATATCAAAGCTGAAGAAAAATTTGAATCACTTAAAACACATTGTATAAGATGCTTAATTGATAGTAACCAAAGAAATTTACTGTATTATAACTTACAAAGTGAGGCATTGAAAGCTGTTTTTCAGGTTAATAAACTTTGTGTTTGCTACTTGTGTAAAAAAATGGTTGAGAATGCAgagatatttatacaaactGTTCTTAGTAATcagatattattaaatgatttgAAAGGTAACCTTGTTACAGatagttttaaaatacaaaGATTACATATAACAAGGGCGCAATGTATGGAAGAGAGGAATAAGAAAGCAACTGAGAGGAAATTTCTTGATTCTCCATTCAAATGTATGGACTGTATCAAAGGTTTTAGGTACAAGCCCAGCTATGATAAACACCTCGAATTACACAGTAAGCAAAATGGCGATTACAAATGCGACATATGCAAGCTGAGAATGGACTCTGAACTTAAGTTATTAGGCCACCAGAAATATCACAAGGTGCGTTTTAAGTGTTTGGAGTGTGGTATGATCCGTACAAACAAATGTACCATAAGAGACCattataacaaatttcattCTGACACAAGGAATGTTTTCCTGTGCAAAATATGCTGTAAGAAGTTTACATGTCAACGGGGACTAAAGAAGCATATGACAAATACTCACACGGAAAGGGTGACTTGCGCACACTGTATGAAAACCTACGCGAACAAGGATGTTCTGAGAACACACCTGACTCTGCGTCACCCCAATGTAGTCGCCGCAGTTGAACAGAAGAAAAACTACATTTGCTTAGAATGTGGGAAAGCATTTAAAGCTCCGTCGCAGTTGAGGATGCATAGCAGTAAGCACACGATGATCAAAAATTACTACTGCGTGGAATGTGATAAGAGTTTCAAAAACGAAGGCGGTCTGAAGCAACACTTGAAAACAACGGCGCAGCACGTGACGCCGCGCAGTTTGCCGCTGGCGTGTTCGGAGTGTGATAAGAAGTTCGCTGTCAGGCGCACCCTGGAGCAGCACATTAACCGGGTTCATCTTAATATTAAGCCGTTCAAGTGCGACCAATGCGACAGGGCATACATCAGCAGCTCTTCGCTGAAGGAACACCGGAAGCTGGCACACGAAGGCTACAAGCGTCCTCTGATACATTCGTGTCCAATGTGCGACAAGGTTTTCGACCGCAACTCGATACTAAAGAGCCACATTCGCACTCACACCGGTGAGCGGCCGTTCCAGTGCAGCGACTGCCCGGCCACCTTCAACCAGTCCGGCGTCCTCGGCACTCACAGGAAGCTCGTACACCTAAAGCAGACGAGGGACGGGAAACCGAAGCCGGACTCcaaataa
- Protein Sequence
- MDIKAEEKFESLKTHCIRCLIDSNQRNLLYYNLQSEALKAVFQVNKLCVCYLCKKMVENAEIFIQTVLSNQILLNDLKGNLVTDSFKIQRLHITRAQCMEERNKKATERKFLDSPFKCMDCIKGFRYKPSYDKHLELHSKQNGDYKCDICKLRMDSELKLLGHQKYHKVRFKCLECGMIRTNKCTIRDHYNKFHSDTRNVFLCKICCKKFTCQRGLKKHMTNTHTERVTCAHCMKTYANKDVLRTHLTLRHPNVVAAVEQKKNYICLECGKAFKAPSQLRMHSSKHTMIKNYYCVECDKSFKNEGGLKQHLKTTAQHVTPRSLPLACSECDKKFAVRRTLEQHINRVHLNIKPFKCDQCDRAYISSSSLKEHRKLAHEGYKRPLIHSCPMCDKVFDRNSILKSHIRTHTGERPFQCSDCPATFNQSGVLGTHRKLVHLKQTRDGKPKPDSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01495261; iTF_01496007; iTF_01115906;
- 90% Identity
- -
- 80% Identity
- -